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comparison seqtk_hety.xml @ 22:f2a792351212 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 75d5141110314addc160504e0a1f9cd66443de66
author iuc
date Wed, 16 Oct 2024 09:08:17 +0000
parents 8f26884c60b6
children
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21:ac22e16bfecd 22:f2a792351212
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_hety" name="seqtk_hety" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_hety" name="seqtk_hety" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>regional heterozygosity</description> 3 <description>regional heterozygosity</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"> 8 <expand macro="requirements">
9 <requirement type="package" version="@AWK_VERSION@">gawk</requirement> 9 <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
10 </expand> 10 </expand>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <command><![CDATA[ 12 <command><![CDATA[
22 <param argument="-w" type="integer" value="50000" label="Window size" /> 22 <param argument="-w" type="integer" value="50000" label="Window size" />
23 <param argument="-t" type="integer" value="5" label="# start positions in a window" /> 23 <param argument="-t" type="integer" value="5" label="# start positions in a window" />
24 <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Treat lowercases as masked" /> 24 <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Treat lowercases as masked" />
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data name="default" format="tabular" label="Heterozygous regions in $in_file.name"/> 27 <data name="default" format="tabular" label="${tool.name} on ${on_string}: Heterozygous regions"/>
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <param name="in_file" value="seqtk_hety.fa"/> 31 <param name="in_file" value="seqtk_hety.fa"/>
32 <param name="w" value="8"/> 32 <param name="w" value="8"/>