Mercurial > repos > iuc > seqtk

comparison seqtk_subseq.xml @ 22:f2a792351212 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 75d5141110314addc160504e0a1f9cd66443de66
author iuc
date Wed, 16 Oct 2024 09:08:17 +0000
parents 8f26884c60b6
children
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21:ac22e16bfecd 22:f2a792351212
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_subseq" name="seqtk_subseq" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_subseq" name="seqtk_subseq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>extract subsequences from FASTA/Q files</description> 3 <description>extract subsequences from FASTA/Q files</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 <requirement type="package" version="@AWK_VERSION@">gawk</requirement> 6 <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
8 </macros> 7 </macros>
8 <expand macro="bio_tools"/>
9 <expand macro="requirements"/> 9 <expand macro="requirements"/>
10 <expand macro="stdio"/> 10 <expand macro="stdio"/>
11 <command><![CDATA[ 11 <command><![CDATA[
12 seqtk subseq 12 seqtk subseq
13 $t 13 $t
39 </conditional> 39 </conditional>
40 <param argument="-t" type="boolean" truevalue="-t" falsevalue="" label="TAB delimited output" /> 40 <param argument="-t" type="boolean" truevalue="-t" falsevalue="" label="TAB delimited output" />
41 <param argument="-l" type="integer" value="0" label="Sequence line length" /> 41 <param argument="-l" type="integer" value="0" label="Sequence line length" />
42 </inputs> 42 </inputs>
43 <outputs> 43 <outputs>
44 <data name="default" format_source="in_file" label="Selected sequences from $in_file.name"> 44 <data name="default" format_source="in_file" label="${tool.name} on ${on_string}: Selected sequences">
45 <change_format> 45 <change_format>
46 <when input="t" value="-t" format="tabular"/> 46 <when input="t" value="-t" format="tabular"/>
47 </change_format> 47 </change_format>
48 </data> 48 </data>
49 </outputs> 49 </outputs>