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comparison seqtk_trimfq.xml @ 22:f2a792351212 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 75d5141110314addc160504e0a1f9cd66443de66
author iuc
date Wed, 16 Oct 2024 09:08:17 +0000
parents 8f26884c60b6
children
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21:ac22e16bfecd 22:f2a792351212
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_trimfq" name="seqtk_trimfq" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_trimfq" name="seqtk_trimfq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>trim FASTQ using the Phred algorithm</description> 3 <description>trim FASTQ using the Phred algorithm</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <expand macro="stdio"/>
10 <command><![CDATA[ 10 <command><![CDATA[
11 seqtk trimfq 11 seqtk trimfq
12 #if $mode.mode_select == "quality": 12 #if $mode.mode_select == "quality":
35 <param argument="-e" type="integer" value="0" label="Trim INT bp from right" /> 35 <param argument="-e" type="integer" value="0" label="Trim INT bp from right" />
36 </when> 36 </when>
37 </conditional> 37 </conditional>
38 </inputs> 38 </inputs>
39 <outputs> 39 <outputs>
40 <data name="default" format_source="in_file" label="$in_file.name trimmed"/> 40 <data name="default" format_source="in_file" label="${tool.name} on ${on_string}: trimmed"/>
41 </outputs> 41 </outputs>
42 <tests> 42 <tests>
43 <test> 43 <test>
44 <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/> 44 <param name="in_file" value="seqtk_trimfq.fq" ftype="fastqsanger"/>
45 <param name="mode_select" value="quality"/> 45 <param name="mode_select" value="quality"/>