Mercurial > repos > iuc > seqtk

comparison seqtk_seq.xml @ 16:48a51c72f5e7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:58:58 -0400
parents 16f2535c08bf
children 069c8f0695ee
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15:16f2535c08bf 16:48a51c72f5e7
29 $x2 29 $x2
30 #if $in_file.is_of_type('fastqillumina') 30 #if $in_file.is_of_type('fastqillumina')
31 -V 31 -V
32 #end if 32 #end if
33 '$in_file' 33 '$in_file'
34 > '$default' 34 @CONDITIONAL_GZIP_OUT@
35 ]]></command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <expand macro="in_faq"/> 37 <expand macro="in_faq"/>
38 <param argument="-q" type="integer" value="0" label="Mask bases with quality lower than INT" /> 38 <param argument="-q" type="integer" value="0" label="Mask bases with quality lower than INT" />
39 <param argument="-X" type="integer" value="255" label="Mask bases with quality higher than INT" /> 39 <param argument="-X" type="integer" value="255" label="Mask bases with quality higher than INT" />
64 <param name="in_file" value="seqtk_seq.fa"/> 64 <param name="in_file" value="seqtk_seq.fa"/>
65 <param name="r" value="True"/> 65 <param name="r" value="True"/>
66 <param name="n" value=""/> 66 <param name="n" value=""/>
67 <output name="default" file="seqtk_seq_revcom.fa" ftype="fasta"/> 67 <output name="default" file="seqtk_seq_revcom.fa" ftype="fasta"/>
68 </test> 68 </test>
69 <test>
70 <param name="in_file" value="seqtk_seq.fa.gz" ftype="fasta.gz"/>
71 <param name="r" value="True"/>
72 <param name="n" value=""/>
73 <output name="default" file="seqtk_seq_revcom.fa.gz" ftype="fasta.gz"/>
74 </test>
69 </tests> 75 </tests>
70 <help><![CDATA[ 76 <help><![CDATA[
71 **What it does** 77 **What it does**
72 78
73 Various utilities for transforming FASTA/Q data 79 Various utilities for transforming FASTA/Q data