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comparison seqtk_sample.xml @ 16:48a51c72f5e7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:58:58 -0400
parents 16f2535c08bf
children 069c8f0695ee
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15:16f2535c08bf 16:48a51c72f5e7
9 <command><![CDATA[ 9 <command><![CDATA[
10 seqtk sample 10 seqtk sample
11 -s $s 11 -s $s
12 '$in_file' 12 '$in_file'
13 $subsample_size 13 $subsample_size
14 > '$default' 14 @CONDITIONAL_GZIP_OUT@
15 ]]></command> 15 ]]></command>
16 <inputs> 16 <inputs>
17 <expand macro="in_faq" /> 17 <expand macro="in_faq" />
18 <param argument="-s" type="integer" value="4" label="RNG seed" help="The seed used for the random number generator. Manually specifying a number here is useful for reproducing the same subsampling over time" /> 18 <param argument="-s" type="integer" value="4" label="RNG seed" help="The seed used for the random number generator. Manually specifying a number here is useful for reproducing the same subsampling over time" />
19 <param name="subsample_size" type="float" value="100" label="Subsample (decimal fraction or number)" /> 19 <param name="subsample_size" type="float" value="100" label="Subsample (decimal fraction or number)" />
26 <param name="in_file" value="seqtk_sample.fa"/> 26 <param name="in_file" value="seqtk_sample.fa"/>
27 <param name="subsample_size" value="4"/> 27 <param name="subsample_size" value="4"/>
28 <param name="s" value="4"/> 28 <param name="s" value="4"/>
29 <output name="default" file="seqtk_sample.out" ftype="fasta"/> 29 <output name="default" file="seqtk_sample.out" ftype="fasta"/>
30 </test> 30 </test>
31 <test>
32 <param name="in_file" value="seqtk_sample.fa.gz" ftype="fasta.gz"/>
33 <param name="subsample_size" value="4"/>
34 <param name="s" value="4"/>
35 <output name="default" file="seqtk_sample.out.gz" ftype="fasta.gz"/>
36 </test>
31 </tests> 37 </tests>
32 <help><![CDATA[ 38 <help><![CDATA[
33 **What it does** 39 **What it does**
34 40
35 Takes a random subsample of FASTA or FASTQ sequences. The RNG is seedable to allow for reproducible results, and defaults to `4 <http://xkcd.com/221/>`__. 41 Takes a random subsample of FASTA or FASTQ sequences. The RNG is seedable to allow for reproducible results, and defaults to `4 <http://xkcd.com/221/>`__.