Mercurial > repos > iuc > seqtk

comparison seqtk_mutfa.xml @ 16:48a51c72f5e7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:58:58 -0400
parents 16f2535c08bf
children 069c8f0695ee
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15:16f2535c08bf 16:48a51c72f5e7
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[ 9 <command><![CDATA[
10 seqtk mutfa 10 seqtk mutfa
11 '$in_file' 11 '$in_file'
12 '$in_snp' 12 '$in_snp'
13 > '$default' 13 @CONDITIONAL_GZIP_OUT@
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <expand macro="in_faq"/> 16 <expand macro="in_faq"/>
17 <param name="in_snp" type="data" format="tabular" label="Input SNP file"/> 17 <param name="in_snp" type="data" format="tabular" label="Input SNP file"/>
18 </inputs> 18 </inputs>
22 <tests> 22 <tests>
23 <test> 23 <test>
24 <param name="in_file" value="seqtk_mutfa.fa"/> 24 <param name="in_file" value="seqtk_mutfa.fa"/>
25 <param name="in_snp" value="seqtk_mutfa.snp"/> 25 <param name="in_snp" value="seqtk_mutfa.snp"/>
26 <output name="default" file="seqtk_mutfa.out" ftype="fasta"/> 26 <output name="default" file="seqtk_mutfa.out" ftype="fasta"/>
27 </test>
28 <test>
29 <param name="in_file" value="seqtk_mutfa.fa.gz" ftype="fasta.gz"/>
30 <param name="in_snp" value="seqtk_mutfa.snp"/>
31 <output name="default" file="seqtk_mutfa.out.gz" ftype="fasta.gz"/>
27 </test> 32 </test>
28 </tests> 33 </tests>
29 <help><![CDATA[ 34 <help><![CDATA[
30 **What it does** 35 **What it does**
31 36