Mercurial > repos > iuc > seqtk

comparison seqtk_mergefa.xml @ 19:36f4c569a594 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146"
author iuc
date Tue, 10 Sep 2019 13:58:18 -0400
parents 069c8f0695ee
children 8f26884c60b6
comparison
equal deleted inserted replaced
18:1d63dbcecb10 19:36f4c569a594
13 $m 13 $m
14 $r 14 $r
15 $h 15 $h
16 '$in_fa1' 16 '$in_fa1'
17 '$in_fa2' 17 '$in_fa2'
18 #echo "| pigz --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' 18 #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
19 ]]></command> 19 ]]></command>
20 <inputs> 20 <inputs>
21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> 21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>
22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> 22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/>
23 <param argument="-q" type="integer" value="0" label="Quality threshold"/> 23 <param argument="-q" type="integer" value="0" label="Quality threshold"/>