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comparison seqtk_randbase.xml @ 0:33ded39275c3 draft

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author iuc
date Wed, 18 Feb 2015 10:52:53 -0500
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1 <?xml version="1.0"?>
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0">
3 <description>choose a random base from hets</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <expand macro="stdio"/>
9 <command><![CDATA[seqtk randbase
10 $in_file
11 > $default]]></command>
12 <inputs>
13 <expand macro="in_faq"/>
14 </inputs>
15 <outputs>
16 <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/>
17 </outputs>
18 <tests>
19 <test>
20 <param name="in_file" value="seqtk_randbase.fa"/>
21 <output name="default" file="seqtk_randbase.out" ftype="fasta"/>
22 </test>
23 </tests>
24 <help><![CDATA[
25 **What it does**
26
27 Randomly resolves ambiguous bases
28
29 ::
30
31 # Input fasta
32 >ambig
33 ACGTMRWSYK
34
35 results in
36
37 ::
38
39 # Output result
40 >ambig
41 ACGTCGTGTT
42
43 @ATTRIBUTION@
44 ]]></help>
45 </tool>