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comparison seqtk_randbase.xml @ 15:16f2535c08bf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
author iuc
date Mon, 05 Jun 2017 13:26:30 -0400
parents 55e75a28fde7
children 48a51c72f5e7
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14:bdc5ba2a7486 15:16f2535c08bf
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> 2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0">
3 <description>choose a random base from hets</description> 3 <description>choose a random base from hets</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[seqtk randbase 9 <command><![CDATA[
10 $in_file 10 seqtk randbase
11 > $default]]></command> 11 '$in_file'
12 <inputs> 12 > '$default'
13 <expand macro="in_faq"/> 13 ]]></command>
14 </inputs> 14 <inputs>
15 <outputs> 15 <expand macro="in_faq"/>
16 <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/> 16 </inputs>
17 </outputs> 17 <outputs>
18 <tests> 18 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/>
19 <test> 19 </outputs>
20 <param name="in_file" value="seqtk_randbase.fa"/> 20 <tests>
21 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> 21 <test>
22 </test> 22 <param name="in_file" value="seqtk_randbase.fa"/>
23 </tests> 23 <output name="default" file="seqtk_randbase.out" ftype="fasta"/>
24 <help><![CDATA[ 24 </test>
25 </tests>
26 <help><![CDATA[
25 **What it does** 27 **What it does**
26 28
27 Randomly resolves ambiguous bases 29 Randomly resolves ambiguous bases
28 30
29 :: 31 ::
39 # Output result 41 # Output result
40 >ambig 42 >ambig
41 ACGTCGTGTT 43 ACGTCGTGTT
42 44
43 @ATTRIBUTION@ 45 @ATTRIBUTION@
44 ]]></help> 46 ]]></help>
45 <expand macro="citation" /> 47 <expand macro="citation" />
46 </tool> 48 </tool>