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comparison seqtk_dropse.xml @ 15:16f2535c08bf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
author iuc
date Mon, 05 Jun 2017 13:26:30 -0400
parents 55e75a28fde7
children 48a51c72f5e7
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14:bdc5ba2a7486 15:16f2535c08bf
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_dropse" name="seqtk_dropse" version="@WRAPPER_VERSION@.0"> 2 <tool id="seqtk_dropse" name="seqtk_dropse" version="@WRAPPER_VERSION@.0">
3 <description>drop unpaired from interleaved Paired End FASTA/Q</description> 3 <description>drop unpaired from interleaved Paired End FASTA/Q</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[seqtk dropse 9 <command><![CDATA[
10 $in_file 10 seqtk dropse
11 > $default]]></command> 11 '$in_file'
12 <inputs> 12 > '$default'
13 <expand macro="in_faq"/> 13 ]]></command>
14 </inputs> 14 <inputs>
15 <outputs> 15 <expand macro="in_faq"/>
16 <data format_source="in_file" hidden="false" name="default" label="Only paired-end reads from $in_file.name"/> 16 </inputs>
17 </outputs> 17 <outputs>
18 <tests> 18 <data name="default" format_source="in_file" label="Only paired-end reads from $in_file.name"/>
19 <test> 19 </outputs>
20 <param name="in_file" value="seqtk_dropse.fq"/> 20 <tests>
21 <output name="default" file="seqtk_dropse.out" ftype="fastq"/> 21 <test>
22 </test> 22 <param name="in_file" value="seqtk_dropse.fq"/>
23 </tests> 23 <output name="default" file="seqtk_dropse.out" ftype="fastq"/>
24 <help><![CDATA[ 24 </test>
25 </tests>
26 <help><![CDATA[
25 **What it does** 27 **What it does**
26 28
27 Remove unpaired reads in an interleaved paired-end FASTA/Q file. Given a fastq file with unpaired reads: 29 Remove unpaired reads in an interleaved paired-end FASTA/Q file. Given a fastq file with unpaired reads:
28 30
29 :: 31 ::
68 @test-2/2 70 @test-2/2
69 CTGGCGAATT 71 CTGGCGAATT
70 + 72 +
71 ?=?*?A?<?@ 73 ?=?*?A?<?@
72 74
73
74 @ATTRIBUTION@ 75 @ATTRIBUTION@
75 ]]></help> 76 ]]></help>
76 <expand macro="citation" /> 77 <expand macro="citation" />
77 </tool> 78 </tool>