Mercurial > repos > iuc > seqkit_locate
diff seqkit_locate.xml @ 6:f8cdd98a4380 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqkit commit 76c1a289f15cc9a9a7d9a49dc132af62cc1d5af2
| author | iuc |
|---|---|
| date | Fri, 26 Sep 2025 16:46:23 +0000 |
| parents | 03b29dff91e4 |
| children |
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--- a/seqkit_locate.xml Mon Mar 17 09:49:16 2025 +0000 +++ b/seqkit_locate.xml Fri Sep 26 16:46:23 2025 +0000 @@ -12,7 +12,7 @@ ln -s '${input}' '${input_identifier}' && seqkit locate ---threads \${GALAXY_SLOTS:-4} +--threads "\${GALAXY_SLOTS:-4}" #if $conditional_pattern.mode == 'expression' --pattern '"$conditional_pattern.pattern"' $conditional_pattern.use_regexp @@ -61,6 +61,7 @@ <add value="]"/> <add value="."/> <add value=","/> + <add value=":"/> </valid> </sanitizer> <validator type="regex" message="Pattern must not end with backslash.">.*[^\\]$</validator> @@ -118,6 +119,20 @@ <param name="input" value="input1.fasta.gz" ftype="fasta.gz"/> <conditional name="conditional_pattern"> <param name="mode" value="expression"/> + <param name="pattern" value="A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)"/> + <param name="use_regexp" value="true"/> + </conditional> + <output name="output" ftype="tabular"> + <assert_contents> + <has_n_lines n="372"/> + <has_n_columns n="7"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="1"> + <param name="input" value="input1.fasta.gz" ftype="fasta.gz"/> + <conditional name="conditional_pattern"> + <param name="mode" value="expression"/> <param name="pattern" value="A[TU]G"/> <param name="use_regexp" value="true"/> </conditional>