Mercurial > repos > iuc > semibin_train

diff train.xml @ 2:35c4a1990ba2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit a9fc83e0029266f910b549d5d1eef6a9bc3e3f7b
author iuc
date Tue, 25 Mar 2025 15:50:55 +0000
parents f9f3d70127c2
children be96c5251f2d
line wrap: on
line diff
--- a/train.xml	Mon Mar 27 08:23:13 2023 +0000
+++ b/train.xml	Tue Mar 25 15:50:55 2025 +0000
@@ -26,14 +26,14 @@
         #end if
     #end for
 #end if
-SemiBin train
-    --mode '$mode.select'
+SemiBin2 train_semi
 #if $mode.select == 'single'
     --input-fasta 'contigs.fasta'
     --data '$mode.data'
     --data-split '$mode.data_split'
     --cannot-link '$mode.cannot_link'
 #else
+    --train-from-many
     #for $e in $mode.input_fasta
     --input-fasta '${e.element_identifier}.fasta'
     #end for
@@ -101,7 +101,7 @@
                 <param name="min_len" value="2500" />
             </conditional>
             <param name="orf_finder" value="prodigal"/>
-            <param name="random-seed" value="0"/>
+            <param name="random_seed" value="0"/>
             <param name="epoches" value="1"/>
             <param name="batch_size" value="2048"/>
             <output name="model" ftype="h5">
@@ -123,7 +123,7 @@
                 <param name="ratio" value="0.05" />
             </conditional>
             <param name="orf_finder" value="prodigal"/>
-            <param name="random-seed" value="0"/>
+            <param name="random_seed" value="0"/>
             <param name="epoches" value="20"/>
             <param name="batch_size" value="2048"/>
             <output name="model" ftype="h5">