Mercurial > repos > iuc > selenzy_wrapper

comparison test-data/pathway.xml @ 0:7f6dab3f705f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/selenzy_wrapper commit ae90bec837703e870850cbeced41aa691869455f
author iuc
date Wed, 29 Jun 2022 09:20:05 +0000
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-1:000000000000 0:7f6dab3f705f
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="ab7a7ab71c6ccfe1bb89180d9a6fb504a8ea4784c1ace396ce99cb6892d1b81e" id="RP_model_003_0261" name="003_0261" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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27 <annotation>
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37 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
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91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
92 <brsynth:smiles/>
93 <brsynth:inchi/>
94 <brsynth:inchikey/>
95 <brsynth:fba_biomass_shadow_price>
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101 <brsynth:thermo_standard_dg_formation>
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103 <brsynth:units value="kilojoule / mole"/>
104 </brsynth:thermo_standard_dg_formation>
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106 </rdf:BRSynth>
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108 </annotation>
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110 <species metaid="_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f" id="MNXM34" name="MNXM34" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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114 <bqbiol:is>
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130 <brsynth:value value="-1607.8991259717538"/>
131 <brsynth:units value="kilojoule / mole"/>
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164 </annotation>
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167 <annotation>
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182 <brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
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206 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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210 <brsynth:fba_fraction_shadow_price>
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241 <brsynth:thermo_standard_dg_formation>
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246 </rdf:BRSynth>
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249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
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260 <bqbiol:is>
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.84"/>
265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
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267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
268 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
269 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
270 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
271 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
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279 <brsynth:rp2_transfo_id value="TRS_0_2_742"/>
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291 <brsynth:MNXR112247/>
292 <brsynth:MNXR116653/>
293 <brsynth:MNXR100621/>
294 <brsynth:MNXR99634/>
295 <brsynth:MNXR112069/>
296 <brsynth:MNXR99650/>
297 <brsynth:MNXR109677/>
298 <brsynth:MNXR113141/>
299 <brsynth:MNXR105052/>
300 <brsynth:MNXR109713/>
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304 <brsynth:MNXR112250/>
305 <brsynth:MNXR112251/>
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308 <brsynth:MNXR117266/>
309 <brsynth:MNXR139515/>
310 <brsynth:MNXR139637/>
311 <brsynth:MNXR112249/>
312 <brsynth:MNXR116655/>
313 <brsynth:MNXR103150/>
314 <brsynth:MNXR112248/>
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331 <brsynth:units value="kilojoule / mole"/>
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340 <brsynth:error value="2.9407032504945367"/>
341 <brsynth:units value="kilojoule / mole"/>
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343 <brsynth:thermo_dG>
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345 <brsynth:error value="2.9407032504945367"/>
346 <brsynth:units value="kilojoule / mole"/>
347 </brsynth:thermo_dG>
348 </brsynth:brsynth>
349 </rdf:BRSynth>
350 </rdf:RDF>
351 </annotation>
352 <listOfReactants>
353 <speciesReference species="MNXM34" stoichiometry="1" constant="true"/>
354 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
355 </listOfReactants>
356 <listOfProducts>
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360 </reaction>
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403 <brsynth:thermo_dGm_prime>
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419 </rdf:BRSynth>
420 </rdf:RDF>
421 </annotation>
422 <listOfReactants>
423 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
424 </listOfReactants>
425 <listOfProducts>
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429 </reaction>
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580 <groups:member groups:idRef="MNXM11"/>
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622 </groups:listOfMembers>
623 </groups:group>
624 </groups:listOfGroups>
625 </model>
626 </sbml>