# HG changeset patch # User iuc # Date 1581329867 0 # Node ID e5fa012d8d93ceffe8db6eb092101d7dcafb080b # Parent e566e361a23edc76cc6bf587fb0e61afb3346fbc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85" diff -r e566e361a23e -r e5fa012d8d93 remove_confounders.xml --- a/remove_confounders.xml Wed Dec 18 20:53:22 2019 +0000 +++ b/remove_confounders.xml Mon Feb 10 10:17:47 2020 +0000 @@ -156,7 +156,7 @@ inspired by Seurat's `regressOut` function in R. More details on the `scanpy documentation -`__ +`__ Correct batch effects by matching mutual nearest neighbors, using `pp.mnn_correct` ================================================================================== @@ -167,7 +167,7 @@ Be reminded that it is not advised to use the corrected data matrices for differential expression testing. More details on the `scanpy documentation -`__ +`__ Correct batch effects with ComBat function (`pp.combat`) @@ -176,7 +176,7 @@ Corrects for batch effects by fitting linear models, gains statistical power via an EB framework where information is borrowed across genes. This uses the implementation of ComBat More details on the `scanpy documentation -`__ +`__ ]]>