Mercurial > repos > iuc > scanpy_plot

comparison macros.xml @ 13:084c74890a1f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
author iuc
date Tue, 20 Aug 2024 09:49:26 +0000
parents 1f380e8a6aec
children aa8abbf399b3
comparison
equal deleted inserted replaced
12:1f380e8a6aec 13:084c74890a1f
433 <expand macro="sanitize_query" /> 433 <expand macro="sanitize_query" />
434 </param> 434 </param>
435 </when> 435 </when>
436 <when value="customfile"> 436 <when value="customfile">
437 <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param> 437 <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param>
438 <param name="header" type="select" label="Header in the list of markers?">
439 <option value="included">Header incldued</option>
440 <option value="not_included">Header not included</option>
441 </param>
438 </when> 442 </when>
439 </conditional> 443 </conditional>
440 </xml> 444 </xml>
441 <xml name="param_num_categories"> 445 <xml name="param_num_categories">
442 <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/> 446 <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/>
469 <xml name="params_inputs"> 473 <xml name="params_inputs">
470 <expand macro="pl_var_names"/> 474 <expand macro="pl_var_names"/>
471 <expand macro="param_groupby"/> 475 <expand macro="param_groupby"/>
472 <expand macro="param_num_categories"/> 476 <expand macro="param_num_categories"/>
473 </xml> 477 </xml>
478 <token name="@CMD_var_names_header_check@"><![CDATA[
479 header='infer'
480 #if $method.var_names.type == 'customfile' and $method.var_names.header == 'not_included' :
481 header=None
482 #end if
483 ]]></token>
474 <token name="@CMD_params_inputs@"><![CDATA[ 484 <token name="@CMD_params_inputs@"><![CDATA[
475 #if $method.var_names.type == 'custom' 485 #if $method.var_names.type == 'custom'
476 #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')]) 486 #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')])
477 var_names=$var_names, 487 var_names=$var_names,
478 #else if $method.var_names.type == 'customfile' 488 #else if $method.var_names.type == 'customfile'