Mercurial > repos > iuc > scanpy_normalize

comparison normalize.xml @ 8:d6f11eb06edb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
author iuc
date Tue, 16 Mar 2021 12:55:35 +0000
parents 6a0ff3769481
children beec6847bcf2
comparison
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7:6a0ff3769481 8:d6f11eb06edb
166 <has_text_matching expression="sc.pp.recipe_zheng17"/> 166 <has_text_matching expression="sc.pp.recipe_zheng17"/>
167 <has_text_matching expression="n_top_genes=1000"/> 167 <has_text_matching expression="n_top_genes=1000"/>
168 <has_text_matching expression="log=True"/> 168 <has_text_matching expression="log=True"/>
169 </assert_contents> 169 </assert_contents>
170 </output> 170 </output>
171 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size"/> 171 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/>
172 </test> 172 </test>
173 <test> 173 <test>
174 <!-- test 2 --> 174 <!-- test 2 -->
175 <param name="adata" value="paul15_subsample.h5ad" /> 175 <param name="adata" value="paul15_subsample.h5ad" />
176 <conditional name="method"> 176 <conditional name="method">
212 <assert_contents> 212 <assert_contents>
213 <has_text_matching expression="sc.pp.recipe_seurat"/> 213 <has_text_matching expression="sc.pp.recipe_seurat"/>
214 <has_text_matching expression="log=True"/> 214 <has_text_matching expression="log=True"/>
215 </assert_contents> 215 </assert_contents>
216 </output> 216 </output>
217 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size"/> 217 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/>
218 </test> 218 </test>
219 </tests> 219 </tests>
220 <help><![CDATA[ 220 <help><![CDATA[
221 Normalize total counts per cell (`pp.normalize_per_cell`) 221 Normalize total counts per cell (`pp.normalize_per_cell`)
222 ========================================================= 222 =========================================================