Mercurial > repos > iuc > scanpy_normalize

comparison normalize.xml @ 11:51f9a8b21134 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
author iuc
date Wed, 22 Sep 2021 21:06:01 +0000
parents beec6847bcf2
children 0ac2f7d40040
comparison
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10:beec6847bcf2 11:51f9a8b21134
167 <has_text_matching expression="sc.pp.recipe_zheng17"/> 167 <has_text_matching expression="sc.pp.recipe_zheng17"/>
168 <has_text_matching expression="n_top_genes=1000"/> 168 <has_text_matching expression="n_top_genes=1000"/>
169 <has_text_matching expression="log=True"/> 169 <has_text_matching expression="log=True"/>
170 </assert_contents> 170 </assert_contents>
171 </output> 171 </output>
172 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> 172 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"/>
173 </test> 173 </test>
174 <test> 174 <test>
175 <!-- test 2 --> 175 <!-- test 2 -->
176 <param name="adata" value="paul15_subsample.h5ad" /> 176 <param name="adata" value="paul15_subsample.h5ad" />
177 <conditional name="method"> 177 <conditional name="method">
213 <assert_contents> 213 <assert_contents>
214 <has_text_matching expression="sc.pp.recipe_seurat"/> 214 <has_text_matching expression="sc.pp.recipe_seurat"/>
215 <has_text_matching expression="log=True"/> 215 <has_text_matching expression="log=True"/>
216 </assert_contents> 216 </assert_contents>
217 </output> 217 </output>
218 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> 218 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.25"/>
219 </test> 219 </test>
220 </tests> 220 </tests>
221 <help><![CDATA[ 221 <help><![CDATA[
222 Normalize total counts per cell (`pp.normalize_per_cell`) 222 Normalize total counts per cell (`pp.normalize_per_cell`)
223 ========================================================= 223 =========================================================