Mercurial > repos > iuc > scanpy_inspect

comparison inspect.xml @ 8:4cbc381aa967 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
author iuc
date Tue, 16 Mar 2021 12:52:13 +0000
parents 9895059b8034
children fc598b15f113
comparison
equal deleted inserted replaced
7:9895059b8034 8:4cbc381aa967
230 #end if 230 #end if
231 inplace=True) 231 inplace=True)
232 232
233 #else if $method.method == "pp.log1p" 233 #else if $method.method == "pp.log1p"
234 sc.pp.log1p( 234 sc.pp.log1p(
235 data=adata, 235 adata,
236 copy=False) 236 copy=False)
237 237
238 #else if $method.method == "pp.scale" 238 #else if $method.method == "pp.scale"
239 sc.pp.scale( 239 sc.pp.scale(
240 data=adata, 240 adata,
241 zero_center=$method.zero_center, 241 zero_center=$method.zero_center,
242 #if $method.max_value 242 #if $method.max_value
243 max_value=$method.max_value, 243 max_value=$method.max_value,
244 #end if 244 #end if
245 copy=False) 245 copy=False)
246 246
247 #else if $method.method == "pp.sqrt" 247 #else if $method.method == "pp.sqrt"
248 sc.pp.sqrt( 248 sc.pp.sqrt(
249 data=adata, 249 adata,
250 copy=False) 250 copy=False)
251 #end if 251 #end if
252 252
253 @CMD_anndata_write_outputs@ 253 @CMD_anndata_write_outputs@
254 ]]></configfile> 254 ]]></configfile>
705 <has_text_matching expression="multi_class='auto'"/> 705 <has_text_matching expression="multi_class='auto'"/>
706 <has_text_matching expression="tol=0.0001"/> 706 <has_text_matching expression="tol=0.0001"/>
707 <has_text_matching expression="C=1.0"/> 707 <has_text_matching expression="C=1.0"/>
708 </assert_contents> 708 </assert_contents>
709 </output> 709 </output>
710 <output name="anndata_out" file="tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad" ftype="h5ad" compare="sim_size"> 710 <output name="anndata_out" file="tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15">
711 <assert_contents> 711 <assert_contents>
712 <has_h5_keys keys="X, obs, obsm, raw.X, raw.var, uns, var" /> 712 <has_h5_keys keys="X, obs, obsm, raw/X, raw/var, uns, var" />
713 </assert_contents> 713 </assert_contents>
714 </output> 714 </output>
715 </test> 715 </test>
716 <test> 716 <test>
717 <!-- test 7 --> 717 <!-- test 7 -->
760 <has_text_matching expression="intercept_scaling=1.0"/> 760 <has_text_matching expression="intercept_scaling=1.0"/>
761 <has_text_matching expression="tol=0.0001"/> 761 <has_text_matching expression="tol=0.0001"/>
762 <has_text_matching expression="C=1.0"/> 762 <has_text_matching expression="C=1.0"/>
763 </assert_contents> 763 </assert_contents>
764 </output> 764 </output>
765 <output name="anndata_out" file="tl.rank_genes_groups.liblinear.krumsiek11.h5ad" ftype="h5ad" compare="sim_size"> 765 <output name="anndata_out" file="tl.rank_genes_groups.liblinear.krumsiek11.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15">
766 <assert_contents> 766 <assert_contents>
767 <has_h5_keys keys="X, obs, obsm, raw.X, raw.var, uns, var" /> 767 <has_h5_keys keys="X, obs, obsm, raw/X, raw/var, uns, var" />
768 </assert_contents> 768 </assert_contents>
769 </output> 769 </output>
770 </test> 770 </test>
771 <!--<test> 771 <!--<test>
772 < test 9 > 772 < test 9 >