# HG changeset patch
# User iuc
# Date 1764756106 0
# Node ID f6c7f9802673386b1a70e86ee115235ed270a4bd
# Parent  1a3c5bb039471b22ac167d441e102604d3943839
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/scanpy commit a6bd86a67a159906ff55e8b2dedda71d019d3caf

diff -r 1a3c5bb03947 -r f6c7f9802673 filter.xml
--- a/filter.xml	Wed Mar 26 09:40:18 2025 +0000
+++ b/filter.xml	Wed Dec 03 10:01:46 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="scanpy_filter" name="Scanpy filter" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
+<tool id="scanpy_filter" name="Scanpy filter" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>mark and subsample</description>
     <macros>
         <import>macros.xml</import>
@@ -87,7 +87,7 @@
     filters = [str(x.strip()) for x in filter_f.readlines()]
 filtered = filters
         #else
-            #set $filters = [str(x.strip()) for x in $method.filter.index.text.split(',')]
+            #set $filters = [str(x.strip()) for x in str($method.filter.index.text).split(',')]
 filtered = $filters
         #end if
     #end if
diff -r 1a3c5bb03947 -r f6c7f9802673 macros.xml
--- a/macros.xml	Wed Mar 26 09:40:18 2025 +0000
+++ b/macros.xml	Wed Dec 03 10:01:46 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.10.2</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <token name="@PROFILE@">21.09</token>
     <xml name="requirements">
         <requirements>
@@ -53,6 +53,7 @@
     <xml name="inputs_common_advanced">
         <section name="advanced_common" title="Advanced Options" expanded="false">
             <param name="show_log" type="boolean" checked="false" label="Output Log?"/>
+            <yield />
         </section>
     </xml>
     <xml name="anndata_outputs">