Mercurial > repos > iuc > scanpy_filter
diff filter.xml @ 7:3984cbbf0b5a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
| author | iuc |
|---|---|
| date | Wed, 20 May 2020 12:21:37 +0000 |
| parents | 9a9944c53825 |
| children | 26d97f4a601c |
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--- a/filter.xml Thu Feb 20 13:21:39 2020 +0000 +++ b/filter.xml Wed May 20 12:21:37 2020 +0000 @@ -165,11 +165,17 @@ </conditional> </when> <when value="tl.filter_rank_genes_groups"> - <param argument="key" type="text" optional="true" label="Key in adata.uns where the rank_genes_groups output is stored"/> - <param argument="groupby" type="text" optional="true" label="The key of the observations grouping to consider"/> + <param argument="key" type="text" optional="true" label="Key in adata.uns where the rank_genes_groups output is stored"> + <expand macro="sanitize_query" /> + </param> + <param argument="groupby" type="text" optional="true" label="The key of the observations grouping to consider"> + <expand macro="sanitize_query" /> + </param> <expand macro="param_use_raw"/> <expand macro="param_log"/> - <param argument="key_added" type="text" value="rank_genes_groups_filtered" label="Key that will contain new values"/> + <param argument="key_added" type="text" value="rank_genes_groups_filtered" label="Key that will contain new values"> + <expand macro="sanitize_query" /> + </param> <param argument="min_in_group_fraction" type="float" min="0" max="1" value="0.25" label="Minimum fraction of genes expressing the gene within the categories"/> <param argument="max_out_group_fraction" type="float" min="0" max="1" value="0.5" label="Maximum fraction of genes expressing the gene outside the categories"/> <param argument="min_fold_change" type="integer" value="2" label="Minimum fold change"/>