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comparison macros.xml @ 2:80d8ca44f8da draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit 1047dc0e36a1c28492d7cd1e860c89ecf3ba30c8
author iuc
date Thu, 27 Sep 2018 08:49:45 -0400
parents 390fc279c3e5
children 097c44aaf6d4
comparison
equal deleted inserted replaced
1:390fc279c3e5 2:80d8ca44f8da
72 ##compute the number of memory available to samtools sort (-m) 72 ##compute the number of memory available to samtools sort (-m)
73 ##use only 75% of available: https://github.com/samtools/samtools/issues/831 73 ##use only 75% of available: https://github.com/samtools/samtools/issues/831
74 addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 74 addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} &&
75 ((addmemory=addmemory*75/100)) && 75 ((addmemory=addmemory*75/100)) &&
76 ]]></token> 76 ]]></token>
77 <xml name="seed_input">
78 <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." />
79 </xml>
77 <xml name="flag_options"> 80 <xml name="flag_options">
78 <option value="1">read is paired</option> 81 <option value="1">read is paired</option>
79 <option value="2">read is mapped in a proper pair</option> 82 <option value="2">read is mapped in a proper pair</option>
80 <option value="4">read is unmapped</option> 83 <option value="4">read is unmapped</option>
81 <option value="8">mate is unmapped</option> 84 <option value="8">mate is unmapped</option>