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comparison test-data/test_input_1_c.sam @ 0:ce3f4ecc9258 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 322cbb9a3bb01f858068bda319e72b0a3ff4251b
author iuc
date Fri, 28 Sep 2018 04:24:35 -0400
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-1:000000000000 0:ce3f4ecc9258
1 @HD VN:1.4
2 @SQ SN:ref1 LN:45
3 @SQ SN:ref2 LN:40
4 @RG ID:fish
5 @RG ID:cow PU:13_&^&&*(:332
6 @RG PU:*9u8jkjjkjd: ID:colt
7 @PG ID:bull PP:donkey
8 @PG ID:donkey
9 @CO Do you know?
10 @CO Another comment from test_input_1_c
11 r008 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt PG:Z:donkey
12 r009 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt PG:Z:donkey
13 r010 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt PG:Z:donkey
14 r010 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:donkey
15 r009 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt PG:Z:donkey
16 r008 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt PG:Z:donkey
17 x10 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow PG:Z:bull
18 x11 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow PG:Z:bull
19 x12 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow PG:Z:bull
20 x13 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow PG:Z:bull
21 x14 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow PG:Z:bull
22 x15 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow PG:Z:bull
23 u2 4 * 0 30 * * 0 0 TAATTAAGTCTACAGAAAAAAAA ???????????????????????