Mercurial > repos > iuc > samtools_markdup

diff samtools_markdup.xml @ 5:6959deb6e031 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 1354b1358df89a922c3243f7e27ce789094b8644"
author iuc
date Sun, 19 Dec 2021 15:54:02 +0000
parents 179eb2befd59
children 562d62e1b595
line wrap: on
line diff
--- a/samtools_markdup.xml	Tue Sep 28 16:03:23 2021 +0000
+++ b/samtools_markdup.xml	Sun Dec 19 15:54:02 2021 +0000
@@ -137,13 +137,13 @@
         <!-- 7) check new mode s -->
         <test expect_num_outputs="1">
             <param name="bamfile" value="1_markdup.sam" />
-            <param name="mode_selector" value="s" />
+            <param name="mode" value="s" />
             <output name="output" file="7_markdup.expected.bam" ftype="bam" lines_diff="4" />
         </test>
         <!-- 8) check include-fails -->
         <test expect_num_outputs="1">
             <param name="bamfile" value="1_markdup.sam" />
-                <param name="fails" value="- -include-fails" />
+            <param name="include_fails" value="true" />
             <output name="output" file="8_markdup.expected.bam" ftype="bam" lines_diff="4" />
         </test>
         <!-- 9) test sam format -->