Mercurial > repos > iuc > samtools_coverage

annotate test-data/results_3.txt @ 4:3cf6efcecc68 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit f79f470b3b2516fb908f5fc6fadc05c626c7f8dc
author iuc
date Fri, 16 May 2025 12:57:21 +0000
parents 8883a04ba181
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
1 insert (599bp)
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
2 > 90.00% │ █ █ │ Number of reads: 4
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
3 > 80.00% │ █ █ │
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
4 > 70.00% │ ██ ██ │ Covered bases: 20bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
5 > 60.00% │ ██ ██ │ Percent covered: 3.339%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
6 > 50.00% │ ██ ██ │ Mean coverage: 0.0668x
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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7 > 40.00% │ ██ ██ │ Mean baseQ: 32
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
8 > 30.00% │ ██ ██ │ Mean mapQ: 30
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
9 > 20.00% │ ██ ██ │
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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10 > 10.00% │ ███ ███ │ Histo bin width: 5bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
11 > 0.00% │ ███ ███ │ Histo max bin: 100%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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12 1 50 100 150 200 250 300 350 400 450 599
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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13
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
14 ref1 (45bp)
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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15 > 90.00% │ ████████████████ █████ ██████████│ Number of reads: 12
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
16 > 80.00% │ ████████████████ █████ ██████████│
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
17 > 70.00% │ ████████████████ █████ ██████████│ Covered bases: 31bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
18 > 60.00% │ ████████████████ █████ ██████████│ Percent covered: 68.89%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
19 > 50.00% │ ████████████████ █████ ██████████│ Mean coverage: 2.49x
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
20 > 40.00% │ ████████████████ █████ ██████████│ Mean baseQ: 255
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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21 > 30.00% │ ████████████████ █████ ██████████│ Mean mapQ: 30
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
22 > 20.00% │ ████████████████ █████ ██████████│
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
23 > 10.00% │ ████████████████ █████ ██████████│ Histo bin width: 1bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
24 > 0.00% │ ████████████████ █████ ██████████│ Histo max bin: 100%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
25 1 10 20 30 45
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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26
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
27 ref2 (40bp)
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
28 > 90.00% │████████████████████████████████████ │ Number of reads: 12
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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29 > 80.00% │████████████████████████████████████ │
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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30 > 70.00% │████████████████████████████████████ │ Covered bases: 36bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
31 > 60.00% │████████████████████████████████████ │ Percent covered: 90%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
32 > 50.00% │████████████████████████████████████ │ Mean coverage: 6.75x
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
33 > 40.00% │████████████████████████████████████ │ Mean baseQ: 63.3
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
34 > 30.00% │████████████████████████████████████ │ Mean mapQ: 30
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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35 > 20.00% │████████████████████████████████████ │
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
36 > 10.00% │████████████████████████████████████ │ Histo bin width: 1bp
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
37 > 0.00% │████████████████████████████████████ │ Histo max bin: 100%
8883a04ba181 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
38 1 10 20 30 40