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comparison tool_dependencies.xml @ 0:d02ec0323dda draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit baff3f60cf4a039a74091e24b3453f4499cfaf02
author iuc
date Wed, 27 Jul 2016 08:42:42 -0400
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-1:000000000000 0:d02ec0323dda
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="trinity" version="2.2.0">
4 <repository changeset_revision="58d411f36881" name="package_trinity_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="bowtie2" version="2.2.6">
10 <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="samtools" version="1.2">
13 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="bioconductor-edger" version="3.14.0">
16 <repository changeset_revision="d1ebebe12abc" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="rsem" version="1.2.28">
19 <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="eXpress" version="1.5.1">
22 <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="bioconductor-limma" version="3.28.10">
25 <repository changeset_revision="90b7c39ce562" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
29 </package>
30 <set_environment version="1.0">
31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable>
32 </set_environment>
33 </tool_dependency>