# HG changeset patch
# User iuc
# Date 1728134969 0
# Node ID c07ffa5e508dd36a1c0b7512ffda91489760e59f
# Parent  de6d84a9bc8f5aa97903d4dcf068515a7d42c371
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/samblaster commit 2bcb9bf1c90bee25a100f14f8ea28909aba89c9a

diff -r de6d84a9bc8f -r c07ffa5e508d samblaster.xml
--- a/samblaster.xml	Wed Sep 01 08:22:35 2021 +0000
+++ b/samblaster.xml	Sat Oct 05 13:29:29 2024 +0000
@@ -1,10 +1,14 @@
-<tool id="samblaster" name="samblaster" version="0.1.24">
+<tool id="samblaster" name="samblaster" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1">
     <description>marks duplicates, outputs split reads, discordant read pairs and unmapped reads</description>
+    <macros>
+        <token name="@TOOL_VERSION@">0.1.24</token>
+        <token name="@VERSION_SUFFIX@">1</token>
+    </macros>
     <xrefs>
         <xref type="bio.tools">samblaster</xref>
     </xrefs>
     <requirements>
-        <requirement type="package" version="0.1.24">samblaster</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">samblaster</requirement>
         <requirement type="package" version="0.6.5">sambamba</requirement>
     </requirements>
     <version_command>samblaster --version</version_command>
@@ -58,24 +62,24 @@
         <param argument="--minClipSize" label="Minumum number of bases a mapped read must be clipped to be included in unmapped file." type="integer" value="20" min="1"/>
     </inputs>
     <outputs>
-        <data name="output_bam" format="bam" label="samblaster alignments on ${on_string}" from_work_dir="output.bam">
+        <data name="output_bam" format="bam" label="${tool.name} on ${on_string}: alignments" from_work_dir="output.bam">
             <filter>output</filter>
         </data>
-        <data name="discordant_bam" format="bam" label="samblaster discordant alignments on ${on_string}" from_work_dir="discordant.bam">
+        <data name="discordant_bam" format="bam" label="${tool.name} on ${on_string}discordant alignments" from_work_dir="discordant.bam">
             <filter>discordantFile</filter>
         </data>
-        <data name="splitter_bam" format="bam" label="samblaster split alignments on ${on_string}" from_work_dir="splitter.bam">
+        <data name="splitter_bam" format="bam" label="${tool.name} on ${on_string}: split alignments" from_work_dir="splitter.bam">
             <filter>splitterFile</filter>
         </data>
-        <data name="unmapped_fastq" format="fastqsanger" label="samblaster unmapped fastq on ${on_string}" from_work_dir="unmapped.fastq">
+        <data name="unmapped_fastq" format="fastqsanger" label="${tool.name} on ${on_string}: unmapped fastq" from_work_dir="unmapped.fastq">
             <filter>unmappedFile</filter>
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input" value="sr.input.bam"/>
             <param name="output" value="true"/>
-            <param name="discordandFile" value="false"/>
+            <param name="discordantFile" value="false"/>
             <param name="splitterFile" value="true"/>
             <param name="unmappedFile" value="true"/>
             <output name="output_bam" file="output.bam" compare="sim_size"/>
@@ -86,10 +90,10 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="input" value="sr.input.sam.gz" ftype="sam"/>
             <param name="output" value="true"/>
-            <param name="discordandFile" value="false"/>
+            <param name="discordantFile" value="false"/>
             <param name="splitterFile" value="true"/>
             <param name="unmappedFile" value="true"/>
             <output name="output_bam" file="output.bam" compare="sim_size"/>