# HG changeset patch # User iuc # Date 1630484536 0 # Node ID 6d7a31ff056f63b325237b4f67721c64ceffd0bf # Parent eec9b8bca0126a00a3cff75131a0115f52e45f0b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ruvseq commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7" diff -r eec9b8bca012 -r 6d7a31ff056f ruvseq.xml --- a/ruvseq.xml Fri Jul 23 22:37:13 2021 +0000 +++ b/ruvseq.xml Wed Sep 01 08:22:16 2021 +0000 @@ -1,5 +1,8 @@ from RNA-seq data + + ruvseq + 1.26.0 0 diff -r eec9b8bca012 -r 6d7a31ff056f ruvseq.xml.orig --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ruvseq.xml.orig Wed Sep 01 08:22:16 2021 +0000 @@ -0,0 +1,320 @@ + + from RNA-seq data +<<<<<<< HEAD + + 1.16.0 + 1 + +======= + + ruvseq + +>>>>>>> 0851b8679 (add tools up until R) + + bioconductor-ruvseq + bioconductor-deseq2 + bioconductor-tximport + bioconductor-genomicfeatures + r-ggrepel + r-getopt + + + + + + + /dev/null | grep -v -i "WARNING: ") + ]]> + + + +#import json +#set sample_table = [] +#for $level in $rep_factorLevel: + #for $file in $level.countsFile: + #silent $sample_table.append({"path": str($file), "label": str($file.element_identifier), "condition": str($level.factorLevel)}) + #end for +#end for +#echo json.dumps($sample_table) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + pdf == True + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 10.1038/nbt.2931 + +