Mercurial > repos > iuc > rpy_statistics_collection

comparison histogram.xml @ 1:2e7bc1bb2dbe draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Fri, 09 Jan 2015 12:56:07 -0500
parents ffcdde989859
children
comparison
equal deleted inserted replaced
0:ffcdde989859 1:2e7bc1bb2dbe
2 <description>of a numeric column</description> 2 <description>of a numeric column</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>statistic_tools_macros.xml</import> 5 <import>statistic_tools_macros.xml</import>
6 </macros> 6 </macros>
7 <command interpreter="python">histogram.py $input $out_file1 $numerical_column "$title" "$xlab" $breaks $density $frequency</command> 7 <command interpreter="python">
8 <inputs> 8 <![CDATA[
9 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> 9 histogram.py
10 <param name="numerical_column" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> 10 $input
11 <param name="breaks" type="integer" size="4" value="0" label="Number of breaks (bars)"/> 11 $out_file1
12 <param name="title" type="text" size="30" value="Histogram" label="Plot title"/> 12 $numerical_column
13 <param name="xlab" type="text" size="30" value="V1" label="Label for x axis"/> 13 "$title"
14 <param name="density" type="boolean" checked="yes" label="Include smoothed density"/> 14 "$xlab"
15 <param name="frequency" type="boolean" checked="no" label="Plot as frequency (counts)"/> 15 $breaks
16 </inputs> 16 $density
17 <outputs> 17 $frequency
18 <data format="pdf" name="out_file1" /> 18 ]]>
19 </outputs> 19 </command>
20 <tests> 20 <inputs>
21 <test> 21 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
22 <param name="input" value="histogram_in1.tabular" ftype="tabular"/> 22 <param name="numerical_column" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
23 <param name="numerical_column" value="2"/> 23 <param name="breaks" type="integer" size="4" value="0" label="Number of breaks (bars)"/>
24 <param name="breaks" value="0"/> 24 <param name="title" type="text" size="30" value="Histogram" label="Plot title"/>
25 <param name="title" value="Histogram"/> 25 <param name="xlab" type="text" size="30" value="V1" label="Label for x axis"/>
26 <param name="xlab" value="V1"/> 26 <param name="density" type="boolean" checked="yes" label="Include smoothed density"/>
27 <param name="density" value="true"/> 27 <param name="frequency" type="boolean" checked="no" label="Plot as frequency (counts)"/>
28 <param name="frequency" value="false"/> 28 </inputs>
29 <output name="out_file1" lines_diff="10" file="histogram_out1.pdf"/> 29 <outputs>
30 </test> 30 <data format="pdf" name="out_file1" />
31 </tests> 31 </outputs>
32 <tests>
33 <test>
34 <param name="input" value="histogram_in1.tabular" ftype="tabular"/>
35 <param name="numerical_column" value="2"/>
36 <param name="breaks" value="0"/>
37 <param name="title" value="Histogram"/>
38 <param name="xlab" value="V1"/>
39 <param name="density" value="true"/>
40 <param name="frequency" value="false"/>
41 <output name="out_file1" lines_diff="10" file="histogram_out1.pdf"/>
42 </test>
43 </tests>
32 <help> 44 <help>
45 <![CDATA[
33 46
34 .. class:: infomark 47 .. class:: infomark
35 48
36 **TIP:** To remove comment lines that do not begin with a *#* character, use *Text Manipulation-&gt;Remove beginning* 49 **TIP:** To remove comment lines that do not begin with a *#* character, use *Text Manipulation->Remove beginning*
37 50
38 .. class:: infomark 51 .. class:: infomark
39 52
40 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* 53 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
41 54
42 ----- 55 -----
43 56
44 **Syntax** 57 **Syntax**
45 58
65 5 58 3.2 78 5 58 3.2
66 6 60 3.1 79 6 60 3.1
67 7 67 3.8 80 7 67 3.8
68 8 68 4.1 81 8 68 4.1
69 9 71 4.3 82 9 71 4.3
70 10 69 3.7 83 10 69 3.7
71 84
72 - Create a histogram on column 2 of the above dataset. 85 - Create a histogram on column 2 of the above dataset.
73 86
74 .. image:: $PATH_TO_IMAGES/histogram2.png 87 .. image:: $PATH_TO_IMAGES/histogram2.png
75 88
76 </help> 89 ]]>
90 </help>
77 </tool> 91 </tool>