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comparison cor.xml @ 1:2e7bc1bb2dbe draft default tip

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author iuc
date Fri, 09 Jan 2015 12:56:07 -0500
parents ffcdde989859
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0:ffcdde989859 1:2e7bc1bb2dbe
2 <description>for numeric columns</description> 2 <description>for numeric columns</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>statistic_tools_macros.xml</import> 5 <import>statistic_tools_macros.xml</import>
6 </macros> 6 </macros>
7 <command interpreter="python">cor.py $input1 $out_file1 $numeric_columns $method</command> 7 <command interpreter="python">
8 <![CDATA[
9 cor.py
10 $input1
11 $out_file1
12 $numeric_columns
13 $method
14 ]]>
15 </command>
8 <inputs> 16 <inputs>
9 <param format="tabular" name="input1" type="data" label="Dataset" help="Dataset missing? See TIP below"/> 17 <param format="tabular" name="input1" type="data" label="Dataset" help="Dataset missing? See TIP below"/>
10 <param name="numeric_columns" label="Numerical columns" type="data_column" numerical="True" multiple="True" data_ref="input1" help="Multi-select list - hold the appropriate key while clicking to select multiple columns" /> 18 <param name="numeric_columns" label="Numerical columns" type="data_column" numerical="True" multiple="True" data_ref="input1" help="Multi-select list - hold the appropriate key while clicking to select multiple columns" />
11 <param name="method" type="select" label="Method"> 19 <param name="method" type="select" label="Method">
12 <option value="pearson">Pearson</option> 20 <option value="pearson">Pearson</option>
13 <option value="kendall">Kendall rank</option> 21 <option value="kendall">Kendall rank</option>
14 <option value="spearman">Spearman rank</option> 22 <option value="spearman">Spearman rank</option>
15 </param> 23 </param>
16 </inputs> 24 </inputs>
17 <outputs> 25 <outputs>
18 <data format="txt" name="out_file1" /> 26 <data format="txt" name="out_file1" />
19 </outputs> 27 </outputs>
20 <tests> 28 <tests>
21 <!-- 29 <!--
22 Test a tabular input with the first line being a comment without a # character to start 30 Test a tabular input with the first line being a comment without a # character to start
23 --> 31 -->
24 <test> 32 <test>
25 <param name="input1" value="cor.tabular" /> 33 <param name="input1" value="cor.tabular" />
26 <param name="numeric_columns" value="2,3" /> 34 <param name="numeric_columns" value="2,3" />
27 <param name="method" value="pearson" /> 35 <param name="method" value="pearson" />
28 <output name="out_file1" file="cor_out.txt" /> 36 <output name="out_file1" file="cor_out.txt" />
29 </test> 37 </test>
30 </tests> 38 </tests>
31 <help> 39 <help>
40 <![CDATA[
32 41
33 .. class:: infomark 42 .. class:: infomark
34 43
35 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* 44 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
36 45
37 .. class:: warningmark 46 .. class:: warningmark
38 47
39 Missing data ("nan") removed from each pairwise comparison 48 Missing data ("nan") removed from each pairwise comparison
40 49
96 105
97 1.0 0.730635686279 106 1.0 0.730635686279
98 0.730635686279 1.0 107 0.730635686279 1.0
99 108
100 So the correlation for our twenty cases is .73, which is a fairly strong positive relationship. 109 So the correlation for our twenty cases is .73, which is a fairly strong positive relationship.
101 </help> 110 ]]>
111 </help>
102 </tool> 112 </tool>