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comparison scatterplot.xml @ 1:2e7bc1bb2dbe draft default tip

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author iuc
date Fri, 09 Jan 2015 12:56:07 -0500
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0:ffcdde989859 1:2e7bc1bb2dbe
2 <description>of two numeric columns</description> 2 <description>of two numeric columns</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <macros> 4 <macros>
5 <import>statistic_tools_macros.xml</import> 5 <import>statistic_tools_macros.xml</import>
6 </macros> 6 </macros>
7 <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command> 7 <command interpreter="python">
8 <inputs> 8 <![CDATA[
9 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> 9 scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"
10 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> 10 ]]>
11 <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" /> 11 </command>
12 <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/> 12 <inputs>
13 <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/> 13 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
14 <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/> 14 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
15 </inputs> 15 <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" />
16 <outputs> 16 <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/>
17 <data format="pdf" name="out_file1" /> 17 <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/>
18 </outputs> 18 <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/>
19 19 </inputs>
20 <tests> 20 <outputs>
21 <test> 21 <data format="pdf" name="out_file1" />
22 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/> 22 </outputs>
23 <param name="col1" value="2"/> 23 <tests>
24 <param name="col2" value="3"/> 24 <test>
25 <param name="title" value="Scatterplot"/> 25 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
26 <param name="xlab" value="V1"/> 26 <param name="col1" value="2"/>
27 <param name="ylab" value="V2"/> 27 <param name="col2" value="3"/>
28 <output name="out_file1" file="scatterplot_out1.pdf" /> 28 <param name="title" value="Scatterplot"/>
29 </test> 29 <param name="xlab" value="V1"/>
30 <param name="ylab" value="V2"/>
31 <output name="out_file1" file="scatterplot_out1.pdf" />
32 </test>
30 </tests> 33 </tests>
31 <help> 34 <help>
35 <![CDATA[
32 36
33 .. class:: infomark 37 .. class:: infomark
34 38
35 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* 39 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
36 40
37 ----- 41 -----
38 42
39 **Syntax** 43 **Syntax**
40 44
41 This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset. 45 This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset.
42 46
43 - All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item. 47 - All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item.
44 48
45 - **Plot title** The scatterplot title 49 - **Plot title** The scatterplot title
46 - **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot. 50 - **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot.
58 5 58 3.2 62 5 58 3.2
59 6 60 3.1 63 6 60 3.1
60 7 67 3.8 64 7 67 3.8
61 8 68 4.1 65 8 68 4.1
62 9 71 4.3 66 9 71 4.3
63 10 69 3.7 67 10 69 3.7
64 68
65 - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset. 69 - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset.
66 70
67 .. image:: $PATH_TO_IMAGES/images/scatterplot.png 71 .. image:: $PATH_TO_IMAGES/images/scatterplot.png
68 72
69 </help> 73 ]]>
74 </help>
70 </tool> 75 </tool>