Mercurial > repos > iuc > rgrnastar

annotate test-data/rnastar_test.log @ 32:4746de55986e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit e5d0d8e40525840311dea1d212af911a6eade256
author iuc
date Sat, 31 May 2025 19:51:43 +0000
parents acd651be2b9c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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de5a55bd9112 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 7edce75096aed3a1aac91d22e86a2739a53cb245
iuc
parents: 4
diff changeset
1 Started job on | .*
de5a55bd9112 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 7edce75096aed3a1aac91d22e86a2739a53cb245
iuc
parents: 4
diff changeset
2 Started mapping on | .*
de5a55bd9112 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 7edce75096aed3a1aac91d22e86a2739a53cb245
iuc
parents: 4
diff changeset
3 Finished on | .*
de5a55bd9112 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 7edce75096aed3a1aac91d22e86a2739a53cb245
iuc
parents: 4
diff changeset
4 Mapping speed, Million of reads per hour | .*
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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5
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
6 Number of input reads | 15447
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
7 Average input read length | 119
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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8 UNIQUE READS:
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
9 Uniquely mapped reads number | 150
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
10 Uniquely mapped reads % | 0.97%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
11 Average mapped length | 105.11
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
12 Number of splices: Total | 131
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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13 Number of splices: Annotated (sjdb) | 0
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
14 Number of splices: GT/AG | 100
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
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15 Number of splices: GC/AG | 6
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
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16 Number of splices: AT/AC | 1
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
17 Number of splices: Non-canonical | 24
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
18 Mismatch rate per base, % | 6.68%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
19 Deletion rate per base | 0.04%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
20 Deletion average length | 1.17
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
21 Insertion rate per base | 0.04%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
22 Insertion average length | 1.50
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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23 MULTI-MAPPING READS:
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
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24 Number of reads mapped to multiple loci | 451
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
25 % of reads mapped to multiple loci | 2.92%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
26 Number of reads mapped to too many loci | 58
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
27 % of reads mapped to too many loci | 0.38%
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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28 UNMAPPED READS:
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
29 Number of reads unmapped: too many mismatches | 0
0
05600859af19 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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30 % of reads unmapped: too many mismatches | 0.00%
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acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
31 Number of reads unmapped: too short | 7912
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
32 % of reads unmapped: too short | 51.22%
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
33 Number of reads unmapped: other | 6876
acd651be2b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 2b3fa63863a366beef057c7f75ccbcaf0c280151
iuc
parents: 11
diff changeset
34 % of reads unmapped: other | 44.51%
4
13dba3e91459 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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35 CHIMERIC READS:
13dba3e91459 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
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36 Number of chimeric reads | 0
13dba3e91459 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
parents: 0
diff changeset
37 % of chimeric reads | 0.00%