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annotate macro.xml @ 1:6bf48c098d36 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
author iuc
date Sun, 18 Jul 2021 18:02:32 +0000
parents 4809cae1b724
children
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4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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1 <macros>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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3 <token name="@TOOL_VERSION@">3.0.2</token>
6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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5 <token name="@VERSION_SUFFIX@">1</token>
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4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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7 <token name="@BLOCK_RULES@">1 corresponds to the first block, 2 corresponds to the second one, etc. This number should not be greater than the number of blocks selected.</token>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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9 <token name="@COMP_RULES@">This number should not be greater than the selected number of component (2, by default).</token>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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1
6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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11 <xml name="output_tests" token_path="">
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4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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12 <param name="output_selector" value="individuals,corcircle,top_variables,ave,design,individual_table,variable_table,rdata"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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13 <output name="individual_plot" file="@PATH@/individuals.pdf" ftype="pdf"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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14 <output name="top_variables" file="@PATH@/top_variables.pdf" ftype="pdf"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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15 <output name="corcircle" file="@PATH@/corcircle.pdf" ftype="pdf"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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16 <output name="ave" file="@PATH@/ave.pdf" ftype="pdf"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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17 <output name="design" file="@PATH@/design.pdf" ftype="pdf"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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18 <output name="rdata" file="@PATH@/rgcca.result.RData" compare="sim_size" delta="1000" ftype="rdata"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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19 <output name="variable_table">
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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20 <assert_contents>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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21 <has_line_matching
1
6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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22 expression='.*"correlation.component1"\s"correlation.component2".*\s"weight.component1"\s"weight.component2".*\s"blocks"'/>
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23 <has_line_matching
1
6bf48c098d36 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit ce05b5eb018ae1c4d580ab5ce1a33896c1aa8c5b"
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24 expression='^.+(\s\-?\d+.\d+){4,6}.+$'/>
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25 </assert_contents>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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26 </output>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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27 </xml>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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29 <xml name="output_tests_3blocks">
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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30 <param name="blocks" value="agriculture.tsv,industry.tsv,politic.tsv" ftype = "tsv"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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31 <section name="analyse">
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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32 <conditional name="tau">
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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33 <param name="bool" value="false"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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34 <param name="value" value="0.75"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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35 </conditional>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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36 <param name="scheme" value="4"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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37 </section>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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38 <assert_command>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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39 <has_text text="--penalty 0.75"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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40 <has_text text="--scheme 4"/>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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41 </assert_command>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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42 </xml>
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44 </macros>
4809cae1b724 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgcca commit 00f9e92845737e05a4afb1c93043f35b7e4ea771"
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