# HG changeset patch # User iuc # Date 1576105583 0 # Node ID fa51ab8337bdac9891615bce66c8e7660103c183 # Parent 5e0643238485bcabc7fe232545aa93547a3e2237 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window commit d357611d8d49631f0eb7c5e022e80cb4c9483308" diff -r 5e0643238485 -r fa51ab8337bd resize_coordinate_window.py --- a/resize_coordinate_window.py Mon Jul 10 11:47:00 2017 -0400 +++ b/resize_coordinate_window.py Wed Dec 11 23:06:23 2019 +0000 @@ -1,3 +1,5 @@ + + import argparse import fileinput import sys @@ -7,8 +9,7 @@ def stop_err(msg): - sys.stderr.write(msg) - sys.exit(1) + sys.exit(msg) parser = argparse.ArgumentParser() @@ -23,7 +24,7 @@ args = parser.parse_args() extend_existing = args.extend_existing == 'existing' -out = open(args.output, 'wb') +out = open(args.output, 'w') chrom_start = int(args.start_coordinate) chrom_lens = dict() @@ -84,6 +85,6 @@ out.close() if len_file_error is not None: - print "All chrom lengths set to %d, error in chrom len file: %s" % (MAX_CHROM_LEN, len_file_error) + print("All chrom lengths set to %d, error in chrom len file: %s" % (MAX_CHROM_LEN, len_file_error)) if len_file_missing: - print "All chrom lengths set to %d, chrom len files are not installed." % MAX_CHROM_LEN + print("All chrom lengths set to %d, chrom len files are not installed." % MAX_CHROM_LEN) diff -r 5e0643238485 -r fa51ab8337bd resize_coordinate_window.xml --- a/resize_coordinate_window.xml Mon Jul 10 11:47:00 2017 -0400 +++ b/resize_coordinate_window.xml Wed Dec 11 23:06:23 2019 +0000 @@ -1,5 +1,8 @@ - + of GFF data + + python +