# HG changeset patch
# User iuc
# Date 1663236433 0
# Node ID 611dbafcb0950af90570d1e36cb725185d637157
# Parent  7ce2085e6284bd83e388d99ab380a2060dc6c3ce
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/red commit d0d15a68ae93d7557efcafaed75be750fec946a4

diff -r 7ce2085e6284 -r 611dbafcb095 red.xml
--- a/red.xml	Wed Sep 14 12:02:18 2022 +0000
+++ b/red.xml	Thu Sep 15 10:07:13 2022 +0000
@@ -2,7 +2,7 @@
     <description>repeat masking</description>
     <macros>
         <token name="@TOOL_VERSION@">2018.09.10</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">red</requirement>
@@ -15,6 +15,8 @@
 Red
 -gnm input/
 -msk output/
+-rpt output/
+-frm 2
 -cor \${GALAXY_SLOTS:-1}
     ]]></command>
     <inputs>
@@ -22,11 +24,13 @@
     </inputs>
     <outputs>
         <data format="fasta" name="masked" from_work_dir="output/genome.msk" />
+        <data format="bed" name="bed" from_work_dir="output/genome.bed" />
     </outputs>
     <tests>
         <test>
             <param name="input" value="small.fa" />
             <output name="masked" file="small.msk" />
+            <output name="bed" file="small.bed" />
         </test>
     </tests>
     <help><![CDATA[
diff -r 7ce2085e6284 -r 611dbafcb095 test-data/small.bed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/small.bed	Thu Sep 15 10:07:13 2022 +0000
@@ -0,0 +1,5 @@
+scaffold_1	612	632
+scaffold_1	4860	4873
+scaffold_1	10619	10633
+scaffold_1	11980	11993
+scaffold_1	12005	12050