rdavidwebservice: rdavidwebservice.xml annotate

annotate rdavidwebservice.xml @ 1:af0225f9f9f3 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"

author	iuc
date	Wed, 01 Sep 2021 08:19:45 +0000
parents	6e5a62e45d4b
children

rev	line source
0 6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	1 <tool id="rdavidwebservice" name="RDAVIDWebService" version="@TOOL_VERSION@">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	2 <description>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	3 Run functional annotation using DAVID
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	4 </description>
1 af0225f9f9f3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7" iuc parents: 0 diff changeset	5 <xrefs>
af0225f9f9f3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7" iuc parents: 0 diff changeset	6 <xref type="bio.tools">rdavidwebservice</xref>
af0225f9f9f3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7" iuc parents: 0 diff changeset	7 </xrefs>
0 6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	8 <macros>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	9 <import>macros.xml</import>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	10 </macros>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	11 <requirements>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	12 <requirement type="package" version="@TOOL_VERSION@">bioconductor-rdavidwebservice</requirement>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	13 </requirements>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	14 <command detect_errors="exit_code"><![CDATA[
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	15 cat '$script' &&
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	16 Rscript '$script'
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	17 ]]></command>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	18 <configfiles>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	19 <configfile name="script"><![CDATA[
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	20 ## Setup R error handling to go to stderr
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	21 options(show.error.messages=F, error=function(){cat(geterrmessage(), file=stderr()); q("no",1,F)})
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	22 ## Unify locale settings
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	23 loc <- Sys.setlocale("LC_MESSAGES", "C.UTF-8")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	24 ## Import libraries
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	25 library(RDAVIDWebService)
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	26
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	27 gene_list <- scan('$input1', what="character")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	28 gene_identifier_type <- '$identifier1'
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	29
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	30 #if str('$__user_email__') != "":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	31 email <- '$__user_email__'
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	32 #else:
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	33 email <- 'galaxy_user@galaxy.org'
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	34 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	35
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	36 david <- DAVIDWebService(email=email, url="https://david.ncifcrf.gov/webservice/services/DAVIDWebService.DAVIDWebServiceHttpSoap12Endpoint/")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	37
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	38 geneList <- addList(david, gene_list, idType=gene_identifier_type,
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	39 listName="genelist", listType="Gene")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	40
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	41 #if str($background.background_selector) == "with_background":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	42 background_list <- scan('$background.input2', what="character")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	43 background_identifier_type <- '$background.identifier2'
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	44 background <- addList(david, background_list, idType=background_identifier_type,
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	45 listName="backgroundlist",listType="Background")
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	46 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	47
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	48 #if str($AnnotationCategories.setAnnotationCategories) == "Yes":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	49 annocategories <- c('$AnnotationCategories.Disease', '$AnnotationCategories.Functional_Categories', '$AnnotationCategories.Gene_Ontology', '$AnnotationCategories.General_Annotations', '$AnnotationCategories.Literature', '$AnnotationCategories.Main_Accessions', '$AnnotationCategories.Pathways', '$AnnotationCategories.Protein_Domains', '$AnnotationCategories.Tissue_Expression')
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	50 annocategories <- annocategories[annocategories != 'None']
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	51 annocategories <- unlist(strsplit(annocategories, split = ","))
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	52 setAnnotationCategories(david, annocategories)
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	53 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	54
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	55 #if str($FunctionalAnnotationCluster.set_FACluster_params) == "Yes":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	56 getClusterReportFile(david, '$output1',
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	57 kappa = as.integer('$FunctionalAnnotationCluster.kappa'),
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	58 overlap = as.integer('$FunctionalAnnotationCluster.overlap'),
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	59 initialSeed = as.integer('$FunctionalAnnotationCluster.initialSeed'),
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	60 finalSeed = as.integer('$FunctionalAnnotationCluster.finalSeed'),
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	61 linkage = as.double('$FunctionalAnnotationCluster.linkage'))
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	62 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	63
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	64 #if str($FunctionalAnnotationChart.set_FAChart_params) == "Yes" :
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	65 getFunctionalAnnotationChartFile(david, '$output2',
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	66 count = as.integer('$FunctionalAnnotationChart.count'),
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	67 threshold = as.double('$FunctionalAnnotationChart.threshold'))
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	68 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	69
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	70 #if str($FunctionalAnnotationTable.set_FATable_params) == "Yes":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	71 getFunctionalAnnotationTableFile(david, '$output3')
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	72 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	73
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	74 #if str($GeneListReport.set_GLReport_params) == "Yes":
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	75 getGeneListReportFile(david, '$output4')
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	76 #end if
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	77 ]]></configfile>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	78 </configfiles>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	79 <inputs>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	80 <param name="input1" type="data" format="txt" label="Select gene list"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	81 <param name="identifier1" type="select" label="Select gene list identifier type">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	82 <expand macro="identifier_options" />
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	83 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	84 <param name="email" type="text" label="I acknowledge that this services will send my galaxy_user email address to an external service: DAVIDWebService. Please confirm with 'yes'." help="E-Mail has to be registered at https://david.ncifcrf.gov/webservice/register.htm in order to get access to DAVID (webservice)">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	85 <validator type="regex" message="You need to agree the terms to continue by typing 'yes'">^'[Yy]es'$</validator>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	86 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	87 <conditional name="background">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	88 <param name="background_selector" type="select" label="Background" help="Default: entire species as background">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	89 <option value="without_background">Use default Background</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	90 <option value="with_background">Use specify Background</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	91 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	92 <when value="with_background">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	93 <param name="input2" type="data" format="txt" label="Select gene list for background"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	94 <param name="identifier2" type="select" label="Select background list identifier type">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	95 <expand macro="identifier_options" />
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	96 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	97 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	98 <when value="without_background">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	99 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	100 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	101 <conditional name="AnnotationCategories">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	102 <param name="setAnnotationCategories" type="select" label="Annotation Categories" help="Default: OMIM_DISEASE, COG_ONTOLOGY, UP_KEYWORDS, UP_SEQ_FEATURE, GOTERM_BP_DIRECT, GOTERM_MF_DIRECT, GOTERM_CC_DIRECT, BBID, BIOCARTA, KEGG_PATHWAY, INTERPRO, PIR_SUPERFAMILY, SMART">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	103 <option value="without_AnnotationCategories">Use default Annotation Categories</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	104 <option value="with_AnnotationCategories">Use specify Annotation Categories</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	105 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	106 <when value="with_AnnotationCategories">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	107 <param name="Disease" type="select" display="checkboxes" multiple="true" label="Disease">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	108 <option value="GAD_DISEASE">GAD_DISEASE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	109 <option value="GAD_DISEASE_CLASS">GAD_DISEASE_CLASS</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	110 <option value="OMIM_DISEASE">OMIM_DISEASE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	111 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	112 <param name="Functional_Categories" type="select" display="checkboxes" multiple="true" label="Functional_Categories">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	113 <option value="COG_ONTOLOGY">COG_ONTOLOGY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	114 <option value="PIR_SEQ_FEATURE">PIR_SEQ_FEATURE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	115 <option value="SP_COMMENT_TYPE">SP_COMMENT_TYPE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	116 <option value="UP_KEYWORDS">UP_KEYWORDS</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	117 <option value="UP_SEQ_FEATURE">UP_SEQ_FEATURE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	118 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	119 <param name="Gene_Ontology" type="select" display="checkboxes" multiple="true" label="Gene_Ontology">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	120 <option value="GOTERM_BP_1">GOTERM_BP_1</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	121 <option value="GOTERM_BP_2">GOTERM_BP_2</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	122 <option value="GOTERM_BP_3">GOTERM_BP_3</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	123 <option value="GOTERM_BP_4">GOTERM_BP_4</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	124 <option value="GOTERM_BP_5">GOTERM_BP_5</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	125 <option value="GOTERM_BP_ALL">GOTERM_BP_ALL</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	126 <option value="GOTERM_BP_DIRECT">GOTERM_BP_DIRECT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	127 <option value="GOTERM_BP_FAT" selected="True">GOTERM_BP_FAT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	128 <option value="GOTERM_CC_1">GOTERM_CC_1</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	129 <option value="GOTERM_CC_2">GOTERM_CC_2</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	130 <option value="GOTERM_CC_3">GOTERM_CC_3</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	131 <option value="GOTERM_CC_4">GOTERM_CC_4</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	132 <option value="GOTERM_CC_5">GOTERM_CC_5</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	133 <option value="GOTERM_CC_ALL">GOTERM_CC_ALL</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	134 <option value="GOTERM_BP_DIRECT">GOTERM_BP_DIRECT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	135 <option value="GOTERM_CC_1">GOTERM_CC_1</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	136 <option value="GOTERM_CC_2">GOTERM_CC_2</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	137 <option value="GOTERM_CC_3">GOTERM_CC_3</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	138 <option value="GOTERM_CC_4">GOTERM_CC_4</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	139 <option value="GOTERM_CC_5">GOTERM_CC_5</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	140 <option value="GOTERM_CC_ALL">GOTERM_CC_ALL</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	141 <option value="GOTERM_CC_FAT" selected="True">GOTERM_CC_FAT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	142 <option value="GOTERM_MF_1">GOTERM_MF_1</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	143 <option value="GOTERM_MF_2">GOTERM_MF_2</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	144 <option value="GOTERM_MF_3">GOTERM_MF_3</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	145 <option value="GOTERM_MF_4">GOTERM_MF_4</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	146 <option value="GOTERM_MF_5">GOTERM_MF_5</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	147 <option value="GOTERM_MF_ALL">GOTERM_MF_ALL</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	148 <option value="GOTERM_MF_FAT" selected="True">GOTERM_MF_FAT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	149 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	150 <param name="General_Annotations" type="select" display="checkboxes" multiple="true" label="General_Annotations">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	151 <option value="CHROMOSOME">CHROMOSOME</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	152 <option value="CYTOBAND">CYTOBAND</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	153 <option value="ENTREZ_GENE_SUMMARY">ENTREZ_GENE_SUMMARY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	154 <option value="OFFICIAL_GENE_SYMBOL">OFFICIAL_GENE_SYMBOL</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	155 <option value="PIR_SUMMARY">PIR_SUMMARY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	156 <option value="SP_COMMENT">SP_COMMENT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	157 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	158 <param name="Literature" type="select" display="checkboxes" multiple="true" label="Literature">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	159 <option value="GENERIF_SUMMARY">GENERIF_SUMMARY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	160 <option value="HIV_INTERACTION_PUBMED_ID">HIV_INTERACTION_PUBMED_ID</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	161 <option value="PUBMED_ID">PUBMED_ID</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	162 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	163 <param name="Main_Accessions" type="select" display="checkboxes" multiple="true" label="Main_Accessions">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	164 <option value="ENSEMBL_GENE_ID">ENSEMBL_GENE_ID</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	165 <option value="ENTREZ_GENE_ID">ENTREZ_GENE_ID</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	166 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	167 <param name="Pathways" type="select" display="checkboxes" multiple="true" label="Pathways">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	168 <option value="BBID">BBID</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	169 <option value="BIOCARTA">BIOCARTA</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	170 <option value="EC_NUMBER">EC_NUMBER</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	171 <option value="KEGG_PATHWAY" selected="True">KEGG_PATHWAY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	172 <option value="REACTOME_PATHWAY">REACTOME_PATHWAY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	173 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	174 <param name="Protein_Domains" type="select" display="checkboxes" multiple="true" label="Protein_Domains">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	175 <option value="GENE3D">GENE3D</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	176 <option value="INTERPRO">INTERPRO</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	177 <option value="PFAM">PFAM</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	178 <option value="PIR_SUPERFAMILY">PIR_SUPERFAMILY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	179 <option value="PRINTS">PRINTS</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	180 <option value="PRODOM">PRODOM</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	181 <option value="PROSITE">PROSITE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	182 <option value="SMART">SMART</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	183 <option value="SUPFAM">SUPFAM</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	184 <option value="TIGRFAMS">TIGRFAMS</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	185 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	186 <param name="Protein_Interactions" type="select" display="checkboxes" multiple="true" label="Protein_Interactions">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	187 <option value="BIOGRID_INTERACTION">BIOGRID_INTERACTION</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	188 <option value="DIP">DIP</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	189 <option value="HIV_INTERACTION">HIV_INTERACTION</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	190 <option value="HIV_INTERACTION_CATEGORY">HIV_INTERACTION_CATEGORY</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	191 <option value="INTACT">INTACT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	192 <option value="MINT">MINT</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	193 <option value="UCSC_TFBS">UCSC_TFBS</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	194 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	195 <param name="Tissue_Expression" type="select" display="checkboxes" multiple="true" label="Tissue_Expression">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	196 <option value="CGAP_EST_QUARTILE">CGAP_EST_QUARTILE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	197 <option value="CGAP_SAGE_QUARTILE">CGAP_SAGE_QUARTILE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	198 <option value="GNF_U133A_QUARTILE">GNF_U133A_QUARTILE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	199 <option value="UNIGENE_EST_QUARTILE">UNIGENE_EST_QUARTILE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	200 <option value="UP_TISSUE">UP_TISSUE</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	201 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	202 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	203 <when value="without_AnnotationCategories">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	204 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	205 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	206 <conditional name="FunctionalAnnotationCluster">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	207 <param name="set_FACluster_params" type="select" label="Functional Annotation Clustering">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	208 <option value="Yes">Yes</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	209 <option value="No">No</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	210 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	211 <when value="Yes">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	212 <param name="overlap" type="integer" min="3" max="10" value="3" label="Similarity Term Overlap"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	213 <param name="kappa" type="select" label="Similarity Threshold">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	214 <option value="20">0.20</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	215 <option value="25">0.25</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	216 <option value="30">0.30</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	217 <option value="35">0.35</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	218 <option value="40">0.40</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	219 <option value="45">0.45</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	220 <option value="50" selected="True">0.50</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	221 <option value="55">0.55</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	222 <option value="60">0.60</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	223 <option value="65">0.65</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	224 <option value="70">0.70</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	225 <option value="75">0.75</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	226 <option value="80">0.80</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	227 <option value="85">0.85</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	228 <option value="90">0.90</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	229 <option value="95">0.95</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	230 <option value="100">1.00</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	231 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	232 <param name="initialSeed" type="integer" min="2" max="10" value="3" label="Initial Group Membership"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	233 <param name="finalSeed" type="integer" min="2" max="10" value="3" label="Initial Group Membership"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	234 <param name="linkage" type="select" label="Multiple Linkage Threshold">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	235 <option value="0.0">0.00</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	236 <option value="0.05">0.05</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	237 <option value="0.10">0.10</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	238 <option value="0.15">0.15</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	239 <option value="0.20">0.20</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	240 <option value="0.25">0.25</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	241 <option value="0.30">0.30</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	242 <option value="0.35">0.35</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	243 <option value="0.40">0.40</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	244 <option value="0.45">0.45</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	245 <option value="0.50" selected="True">0.50</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	246 <option value="0.55">0.55</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	247 <option value="0.60">0.60</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	248 <option value="0.65">0.65</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	249 <option value="0.70">0.70</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	250 <option value="0.75">0.75</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	251 <option value="0.80">0.80</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	252 <option value="0.85">0.85</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	253 <option value="0.90">0.90</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	254 <option value="0.95">0.95</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	255 <option value="1.0">1.00</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	256 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	257 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	258 <when value="No">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	259 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	260 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	261 <conditional name="FunctionalAnnotationChart">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	262 <param name="set_FAChart_params" type="select" label="Functional Annotation Chart">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	263 <option value="Yes">Yes</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	264 <option value="No" selected="True">No</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	265 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	266 <when value="Yes">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	267 <param name="count" type="integer" label="Count" value="2" />
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	268 <param name="threshold" type="float" label="EASE" value="0.1" />
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	269 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	270 <when value="No">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	271 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	272 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	273 <conditional name="FunctionalAnnotationTable">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	274 <param name="set_FATable_params" type="select" label="Functional Annotation Table">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	275 <option value="Yes">Yes</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	276 <option value="No" selected="True">No</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	277 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	278 <when value="Yes">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	279 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	280 <when value="No">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	281 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	282 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	283 <conditional name="GeneListReport">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	284 <param name="set_GLReport_params" type="select" label="Gene List Report">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	285 <option value="Yes">Yes</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	286 <option value="No" selected="True">No</option>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	287 </param>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	288 <when value="Yes">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	289 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	290 <when value="No">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	291 </when>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	292 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	293 </inputs>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	294 <outputs>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	295 <data name="output1" format="tabular" label="${tool.name} on ${on_string}: Functional Annotation Cluster">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	296 <filter>FunctionalAnnotationCluster['set_FACluster_params'] == 'Yes'</filter>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	297 </data>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	298 <data name="output2" format="tabular" label="${tool.name} on ${on_string}: Functional Annotation Chart">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	299 <filter>FunctionalAnnotationChart['set_FAChart_params'] == 'Yes'</filter>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	300 </data>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	301 <data name="output3" format="tabular" label="${tool.name} on ${on_string}: Functional Annotation Table">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	302 <filter>FunctionalAnnotationTable['set_FATable_params'] == 'Yes'</filter>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	303 </data>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	304 <data name="output4" format="tabular" label="${tool.name} on ${on_string}: Gene List Report">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	305 <filter>GeneListReport['set_GLReport_params'] == 'Yes'</filter>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	306 </data>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	307 </outputs>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	308 <tests>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	309 <test>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	310 <param name="input1" value="demolist1" ftype="tabular"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	311 <param name="identifier1" value="AFFYMETRIX_3PRIME_IVT_ID"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	312 <param name="email" value="yes"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	313 <conditional name="AnnotationCategories">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	314 <param name="setAnnotationCategories" value="with_AnnotationCategories"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	315 <param name="Disease" value="GAD_DISEASE,GAD_DISEASE_CLASS,OMIM_DISEASE"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	316 <param name="Gene_Ontology" value="GOTERM_MF_FAT,GOTERM_CC_FAT,GOTERM_BP_FAT"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	317 <param name="Pathways" value="KEGG_PATHWAY"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	318 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	319 <conditional name="FunctionalAnnotationCluster">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	320 <param name="set_FACluster_params" value="Yes"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	321 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	322 <conditional name="FunctionalAnnotationChart">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	323 <param name="set_FAChart_params" value="Yes"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	324 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	325 <conditional name="FunctionalAnnotationTable">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	326 <param name="set_FATable_params" value="Yes"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	327 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	328 <conditional name="GeneListReport">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	329 <param name="set_GLReport_params" value="Yes"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	330 </conditional>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	331 <output name="output1">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	332 <assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	333 <has_text_matching expression="Annotation Cluster 1 Enrichment Score: \d\.\d*"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	334 </assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	335 </output>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	336 <output name="output2">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	337 <assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	338 <has_line_matching expression="Category Term Count % PValue Genes List Total Pop Hits Pop Total Fold Enrichment Bonferroni Benjamini FDR"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	339 </assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	340 </output>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	341 <output name="output3">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	342 <assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	343 <has_line_matching expression="ID Gene Name Species BBID BIOCARTA COG_ONTOLOGY GOTERM_BP_DIRECT GOTERM_CC_DIRECT GOTERM_MF_DIRECT INTERPRO KEGG_PATHWAY OMIM_DISEASE PIR_SUPERFAMILY SMART UP_KEYWORDS UP_SEQ_FEATURE"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	344 </assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	345 </output>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	346 <output name="output4">
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	347 <assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	348 <has_line_matching expression="ID Name Species"/>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	349 </assert_contents>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	350 </output>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	351 </test>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	352 </tests>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	353 <help><![CDATA[
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	354 What it does
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	355
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	356 Retrieve data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This tool offers the main functionalities of DAVID website including:
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	357
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	358 i) user-friendly connectivity to upload gene/background list/s, change gene/background position
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	359
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	360 ii) Reports of the submitted Gene List, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	361
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	362
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	363 Links and registration
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	364
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	365 http://david.abcc.ncifcrf.gov/ and
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	366 https://bioconductor.org/packages/release/bioc/html/RDAVIDWebService.html
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	367
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	368 The used e-mail address has to be registered at https://david.ncifcrf.gov/webservice/register.htm in order to get access to DAVID (WebService)
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	369
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	370 ]]></help>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	371 <citations>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	372 <citation type="doi">10.1093/bioinformatics/btt487</citation>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	373 <citation type="doi">10.1038/nprot.2008.211</citation>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	374 </citations>
6e5a62e45d4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b iuc parents: diff changeset	375 </tool>

Mercurial > repos > iuc > rdavidwebservice

annotate rdavidwebservice.xml @ 1:af0225f9f9f3 draft default tip