Mercurial > repos > iuc > rcorrector

comparison test-data/fixed_sample_read1.cor.fq @ 0:ec100df3085c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rcorrector commit eba2cb86379f6ee6899a1141226e191c63fadfa6
author iuc
date Thu, 13 Sep 2018 06:59:42 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:ec100df3085c
1 @Id_4 Part1.fastq.000000008 contig=chr1:317720-453948W:ENST00000445840.1:2:180:5:85:S/1 haplotype=0 length=100 orig_begin=0 orig_end=76 haplotype_infix=GCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMM strand=forward exp=medium
2 GCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTG
3 +
4 EBHA>BE<<B?FG=9GB>ACGD;>B:C@@<A@;@7<:D084:H<;7::/5094=A169688=$=66B.0:A05169
5 @Id_6 Part1.fastq.000000012 contig=chr1:317720-453948W:ENST00000445840.1:4:180:-6:131:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
6 GTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCA
7 +
8 C>A=D=FJF><;DA@IGJ:I99>GC:>?<D8AB<;;C9=279<26<=-:E5?D;44@36=48.8=58F-:C524*0.C3)62M--,!%>/>,4-,04*.+
9 @Id_8 Part1.fastq.000000016 contig=chr1:317720-453948W:ENST00000445840.1:6:180:12:230:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=AAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
10 AAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGA
11 +
12 ;HBDE@I=GB@ABAM9<>B;G><FD>D=CA?9EA=A:B;97:+?/7588:9@:39)4;;/2:48329651(.;A5/*2*5#:2@;!/*"42.,0C1)--&
13 @Id_12 Part1.fastq.000000024 contig=chr1:317720-453948W:ENST00000445840.1:10:180:19:72:S/2 haplotype=0 length=100 orig_begin=0 orig_end=49 haplotype_infix=AGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGA edit_string=MMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
14 AGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGA
15 +
16 GCLII<FH>DI=@EBFB5P@GBE8=89B9;G@IA<=B>A;879A;77;8
17 @Id_13 Part1.fastq.000000026 contig=chr1:317720-453948W:ENST00000445840.1:11:180:3:115:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMEMMMMMMMEMMMEMM strand=forward exp=medium
18 CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTT
19 +
20 H=ACCD?D7EBGCAGGHEEBA9?7<6=G@8;8??74?A@6A<6:74>1<37/>>E8<1<::7;3:5+8-A8*)9#+229633.0+1,.,7+*!!,0-!%+
21 @Id_14 Part1.fastq.000000028 contig=chr1:317720-453948W:ENST00000445840.1:12:180:-11:166:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
22 CATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGA
23 +
24 EHCHB?F?@G@FA8G>?D;5<8+=G;3F<@>7G7@<69@K2<1>??E46>6325A5@-D79176:5&,35M57))2*41:)>!4502!,!!(1)4&%3*'
25 @Id_15 Part1.fastq.000000030 contig=chr1:317720-453948W:ENST00000445840.1:13:180:-25:144:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
26 GTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAA
27 +
28 CA?B>BK@HKJ?C@DC;:9>9<@BC<>@B;C==8B>HO;94CB@72D97?4F<7>?GC8?,63)76981C9365?A->94#8)7+2!*/18%&3':,$&8
29 @Id_18 Part1.fastq.000000036 contig=chr1:317720-453948W:ENST00000445840.1:16:180:26:182:S/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
30 TAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAA
31 +
32 @B>FBB;A>?C=FAC;???B9=?::>;E?=>;?8A99?9,?66;;==0-9DH5;8EC,7*93A6.7&A056?(*&635)=:G1/74&5"./)&7?)5.*%
33 @Id_19 Part1.fastq.000000038 contig=chr1:317720-453948W:ENST00000445840.1:17:180:-1:127:S/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=ACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGAT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEM strand=forward exp=medium
34 ACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGAT
35 +
36 ?CAEJHG<<E>:C?CAE>?9I;=E;;;9>:63;G=C:858<?G=:=5-/-05955E/E/J-53-=;+2?-?',31::;0/C5A.-.,-&7++4686297&
37 @Id_20 Part1.fastq.000000040 contig=chr1:317720-453948W:ENST00000445840.1:18:180:1:173:S/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=AGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTT edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
38 AGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTT
39 +
40 @EACA@?>=EEI@AEB679J<96AJ:9=H2@<B?6D778;5B692>;9<B6?750(@:@5-)332=/154*6-.E6(,/.(>.+%+>&6E%4(./,14(4
41 @Id_21 Part1.fastq.000000042 contig=chr1:317720-453948W:ENST00000445840.1:19:180:-19:117:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
42 CAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTG
43 +
44 BE>EBH@F?=AD?DFG@=5<<?5=G<3>4@6<E>B-<>B:8>16.;7/;9>:4&::/249=?>64F">-/2<!?/9+58%2321?&805'!8/2#5$3!5
45 @Id_26 Part1.fastq.000000052 contig=chr1:317720-453948W:ENST00000445840.1:24:180:50:207:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=AAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACC edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMEMMMMMMMMM strand=forward exp=medium
46 AAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACC
47 +
48 H@JADFG@;;8A@@B@@>:<9C?DA<><:=@5;5:?:987D5<AA??E;3)68J/<<?767=8;5:3='!*(%/+!,09)'&*&206*0+-B"!78;%!/
49 @Id_27 Part1.fastq.000000054 contig=chr1:317720-453948W:ENST00000445840.1:25:180:14:194:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
50 GTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAA
51 +
52 GD@C@I@HB><B@A;?@>:;7H;A03:=:A@A?=:?75H=?DB7@:?4;4118B13.54B/0-1:999')I:3.*4>492/"61365C!-<0%45104K#
53 @Id_29 Part1.fastq.000000058 contig=chr1:317720-453948W:ENST00000445840.1:27:180:47:118:S/2 haplotype=0 length=100 orig_begin=0 orig_end=67 haplotype_infix=GATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
54 GATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAA
55 +
56 M@C?AC<AEE;CB7?C:?E>@A9==?6BE:E57>:9-:5E7C2<15=-7+6/=?68>@)67.7.3E3
57 @Id_32 Part1.fastq.000000064 contig=chr1:317720-453948W:ENST00000445840.1:30:180:32:142:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
58 GATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTG
59 +
60 EGC>==@>HB@=;G8D8@;B:?@@=>47D6:8H2?<=6:>=@83/<749:4-6B)3@,(=:B<:+A5*9'!)"6;<'1=&)4-&)%!(7/+3*;$+'/2!
61 @Id_33 Part1.fastq.000000066 contig=chr1:317720-453948W:ENST00000445840.1:31:180:-4:196:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=TTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
62 TTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATA
63 +
64 IIJFD@DCA@>B?DBHEA6@BH>:5?8A;GC7>94B9;52=<E=9-?E@2(9+@951569>65*46=@.-:/';:4*;@%?*--+-*9,3(,&".(5"('
65 @Id_34 Part1.fastq.000000068 contig=chr1:317720-453948W:ENST00000445840.1:32:180:44:221:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=GGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
66 GGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTG
67 +
68 HG><DLADHBCG@?E??GDJC=@=CH@7>>=?>8E<=<B:577;0FE>@5A;>/,)988A/3255/+><A(0;+&/6*)7;9.-$3+:3+1+5./(:/!$
69 @Id_36 Part1.fastq.000000072 contig=chr1:317720-453948W:ENST00000445840.1:34:180:24:196:S/1 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTG edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
70 CTTAAAATGATTCAACAGGAGGAGATAAGGAAGCTCGAGGAAGAGAAAAAACAACTGGAAGGAGAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTG
71 +
72 KLAD8@B;EA><;?<<DCE:;>5A;ABE<I?B;7=4-AB8D7.+A:?5>*2-23@75";4-7.9@3-<<B503!22(/4.(+65&6,2**,.-0,!,,*5
73 @Id_37 Part1.fastq.000000074 contig=chr1:317720-453948W:ENST00000445840.1:35:180:87:166:S/2 haplotype=0 length=100 orig_begin=0 orig_end=75 haplotype_infix=GAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACCGATACAAAGAAA edit_string=MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMEM strand=forward exp=medium
74 GAAATCATAGATTTTTATAAAATGAAAGCTGCCTCTGAAGCACTGCAGACTCAGCTGAGCACCGATACAAAGAAA
75 +
76 IJHHCLNF=?QG;<FEA@F6B9A7BBCBA?;DC:9:B6::9<7:<A,>I,@L>C8>0<=;07@1378')91;7)5
77 @Id_38 Part1.fastq.000000076 contig=chr1:317720-453948W:ENST00000445840.1:36:180:-41:170:S/2 haplotype=0 length=100 orig_begin=0 orig_end=100 haplotype_infix=CAGCCACACTGCTTTGGTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCT edit_string=MMMMMMMMMMMEMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM strand=forward exp=medium
78 CAGCCACACTGATTTGGTGTCACAACTGCACATTGGTTTCACAGCTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGGAGATAAGGAAGCT
79 +
80 ABGGMJFA?BCGQHD96JH>G4B9=1@??D@=4:2-B9=6<993:3C>1?:9<6:11B8A25.95<1/?'5D=5<8.5-)#6:+2@&5!F/.#4)!#1!(