Mercurial > repos > iuc > raceid_trajectory

diff raceid_trajectory.xml @ 6:d18829706789 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 53916f6803b93234f992f5fd4fad61d7013d82af"
author iuc
date Thu, 15 Apr 2021 18:56:27 +0000
parents ce17a7142829
children c34eff5473d9
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line diff
--- a/raceid_trajectory.xml	Wed Jan 29 22:14:26 2020 +0000
+++ b/raceid_trajectory.xml	Thu Apr 15 18:56:27 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="raceid_trajectory" name="Lineage computation using StemID" version="@VERSION_RACEID@.@VERSION_WRAPPER@" >
+<tool id="raceid_trajectory" name="Lineage computation using StemID" version="@VERSION_RACEID@+galaxy@VERSION_WRAPPER@" >
     <description>generates lineage from prior clustering</description>
     <macros>
         <import>macros.xml</import>
@@ -32,7 +32,7 @@
             <param name="showcells" type="boolean" checked="false" label="Show Cells" help="Projections of cells are shown in the plot" />
             <param name="scthr" type="float" min="0" max="1" value="0" label="Score Threshold" help="Score threshold for links to be shown in the graph" />
             <expand macro="use_defaults_no">
-                <param name="showtsne" type="boolean" checked="true" label="Show tSNE" help="Show transparent t-SNE map of cells in the background" />
+                <!-- <param name="showtsne" type="boolean" checked="true" label="Show tSNE" help="Show transparent t-SNE map of cells in the background" /> -->
                 <param name="tp" type="float" min="0" max="1" value="0.5" label="Transparency" help="Level of transparency of t-SNE map" />
             </expand>
         </section>
@@ -54,7 +54,7 @@
             <!-- All defaults -->
             <param name="inputrds" value="out_cluster_default.rdat" />
             <output name="outpdf" value="out_traject_default.pdf" compare="sim_size" delta="15" />
-            <output name="outrdat" value="out_traject_default.ltree.rdat" compare="sim_size" delta="15" />
+            <output name="outrdat" value="out_traject_default.ltree.rdat" compare="sim_size" delta="500" />
         </test>
         <test>
             <!-- Manually specify the defaults: should ideally give same output as above test -->
@@ -82,7 +82,7 @@
                 <param name="showcells" value="false" />
                 <param name="scthr" value="0" />
                 <expand macro="test_nondef" >
-                    <param name="showtsne" value="true" />
+                    <!-- <param name="showtsne" value="true" /> -->
                     <param name="tp" value="0.5" />
                 </expand>
             </section>
@@ -90,8 +90,8 @@
                 <param name="nn" value="1" />
                 <param name="scthr" value="0" />
             </section>
-            <output name="outpdf" value="out_traject_default.pdf" compare="sim_size" delta="15" />
-            <output name="outrdat" value="out_traject_default.ltree.rdat" compare="sim_size" delta="15" />
+            <output name="outpdf" value="out_traject_default.pdf" compare="sim_size" delta="500" />
+            <output name="outrdat" value="out_traject_default.ltree.rdat" compare="sim_size" delta="500" />
         </test>
         <test>
             <!-- Non-defaults -->
@@ -119,7 +119,7 @@
                 <param name="showcells" value="true" />
                 <param name="scthr" value="0.5" />
                 <expand macro="test_nondef" >
-                    <param name="showtsne" value="false" />
+               <!--     <param name="showtsne" value="false" /> -->
                     <param name="tp" value="0.25" />
                 </expand>
             </section>
@@ -127,7 +127,7 @@
                 <param name="nn" value="2" />
                 <param name="scthr" value="0.5" />
             </section>
-            <output name="outpdf" value="out_traject_adv_nondef.pdf" compare="sim_size" delta="15" />
+            <output name="outpdf" value="out_traject_adv_nondef.pdf" compare="sim_size" delta="500" />
         </test>
     </tests>
     <help><![CDATA[