Mercurial > repos > iuc > query_tabular

comparison filter_tabular.py @ 13:b972f6137887 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
author iuc
date Thu, 19 Aug 2021 19:38:52 +0000
parents 81ad914a0b08
children
comparison
equal deleted inserted replaced
12:504f24a8eb76 13:b972f6137887
17 help='Input file for filtering') 17 help='Input file for filtering')
18 parser.add_option('-j', '--jsonfile', dest='jsonfile', default=None, 18 parser.add_option('-j', '--jsonfile', dest='jsonfile', default=None,
19 help='JSON array of filter specifications') 19 help='JSON array of filter specifications')
20 parser.add_option('-o', '--output', dest='output', default=None, 20 parser.add_option('-o', '--output', dest='output', default=None,
21 help='Output file for query results') 21 help='Output file for query results')
22 parser.add_option('-c', '--comment_char)', dest='comment_char', default=None,
23 help='Line comment character')
22 parser.add_option('-v', '--verbose', dest='verbose', default=False, 24 parser.add_option('-v', '--verbose', dest='verbose', default=False,
23 action='store_true', 25 action='store_true',
24 help='verbose') 26 help='verbose')
25 (options, args) = parser.parse_args() 27 (options, args) = parser.parse_args()
26 28
57 ['%s: %s' % (k, f[k]) 59 ['%s: %s' % (k, f[k])
58 for k in set(f.keys()) - set(['filter'])])), 60 for k in set(f.keys()) - set(['filter'])])),
59 file=sys.stdout) 61 file=sys.stdout)
60 62
61 try: 63 try:
62 filter_file(inputFile, outputFile, filters=filters) 64 filter_file(inputFile, outputFile, comment_char=options.comment_char, filters=filters)
63 except Exception as e: 65 except Exception as e:
64 exit('Error: %s' % (e)) 66 exit('Error: %s' % (e))
65 67
66 68
67 if __name__ == "__main__": 69 if __name__ == "__main__":