Mercurial > repos > iuc > qualimap_multi_bamqc

changeset 4:14121c34e534 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 25200b2c00364b3d371c14cb4624b246446e548b
author iuc
date Thu, 11 Jul 2024 14:41:36 +0000
parents 927a13c57186
children
files qualimap_macros.xml qualimap_multi_bamqc.xml
diffstat 2 files changed, 6 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/qualimap_macros.xml	Wed Sep 01 08:17:15 2021 +0000
+++ b/qualimap_macros.xml	Thu Jul 11 14:41:36 2024 +0000
@@ -1,5 +1,6 @@
 <macros>
-    <token name="@VERSION@">2.2.2d</token>
+    <token name="@VERSION@">2.3</token>
+    <token name="@VERSION_SUFFIX@">0</token>
 
     <xml name="requirements">
         <requirements>
--- a/qualimap_multi_bamqc.xml	Wed Sep 01 08:17:15 2021 +0000
+++ b/qualimap_multi_bamqc.xml	Thu Jul 11 14:41:36 2024 +0000
@@ -1,5 +1,4 @@
-<tool id="qualimap_multi_bamqc" name="QualiMap Multi-Sample BamQC" version="@VERSION@">
-    <expand macro="bio_tools"/>
+<tool id="qualimap_multi_bamqc" name="QualiMap Multi-Sample BamQC" version="@VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
     <macros>
         <import>qualimap_macros.xml</import>
         <xml name="test_collection">
@@ -17,6 +16,7 @@
             </collection>
         </xml>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <expand macro="version_command" />
     <command detect_errors="exit_code"><![CDATA[
@@ -83,9 +83,7 @@
             <when value="individual">
                 <repeat name="bam_qc_data" default="2" min="2"
                 title="BAM QC data to combine">
-                    <param name="bam_qc_input" type="data_collection" collection_type="list" format="txt"
-                    label="Single-sample BAM QC data"
-                    help="" />
+                    <param name="bam_qc_input" type="data_collection" format="txt" label="Single-sample BAM QC data" help="" collection_type="list" />
                     <param name="sample_name" type="text"
                     label="Name to use for this dataset"
                     help="This is the name that will be used for this dataset throughout the Qualimap report. Default: Name of the raw data collection in the history" />
@@ -98,9 +96,7 @@
                     </param>
                     <repeat name="bam_qc_data" default="1" min="1"
                     title="Data associated with this group">
-                        <param name="bam_qc_input" type="data_collection" collection_type="list" format="txt" multiple="true"
-                        label="Single-sample BAM QC data"
-                        help="" />
+                        <param name="bam_qc_input" type="data_collection" format="txt" label="Single-sample BAM QC data" help="" collection_type="list" multiple="true" />
                     </repeat>
                 </repeat>
             </when>