Mercurial > repos > iuc > qualifilter
diff test-data/QC_matrix.tsv @ 0:b694fab47ac7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
| author | iuc |
|---|---|
| date | Mon, 15 Dec 2025 14:04:25 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/QC_matrix.tsv Mon Dec 15 14:04:25 2025 +0000 @@ -0,0 +1,11 @@ +Sample Total_reads Mapped_reads Mapping_pct Median_depth Coverage_gte_10x_pct GC_pct Kraken_top1_pct Kraken_unclassified_pct Contam_pct QC_status Total_reads_pass Coverage_gte_10x_pct_pass Contam_pct_pass MTB_reads Unclassified_reads +ERR2510682 2243645.0 2147374.0 95.71 35 96.56 63.95 89.74 3.35 10.26 Fail True True False 2013353.67 75058.8 +ERR4797736 2930841.0 2917004.0 99.53 91 97.28 65.98 96.48 0.51 3.52 Pass True True True 2827782.52 15081.95 +ERR4810698 10001091.0 9936216.0 99.35 344 98.82 66.07 98.49 0.29 1.51 Pass True True True 9850413.37 29200.36 +ERR4812967 3172047.0 3142927.0 99.08 106 98.54 65.01 98.39 0.34 1.61 Pass True True True 3121015.07 10924.71 +ERR4829557 3043795.0 3004399.0 98.71 101 97.21 65.46 97.6 0.73 2.4 Pass True True True 2970882.6 22299.31 +ERR4831263 4383612.0 4331884.0 98.82 147 98.4 64.93 98.54 0.33 1.46 Pass True True True 4319583.07 14558.43 +ERR4831716 3010970.0 2724126.0 90.47 41 96.99 63.61 84.97 4.71 15.03 Fail True True False 2558310.92 141700.63 +ERR8665675 1612980.0 1601774.0 99.31 34 98.06 64.5 97.38 0.47 2.62 Pass True True True 1570695.09 7601.19 +ERR8665676 1586447.0 1575329.0 99.3 34 98.01 64.5 97.36 0.48 2.64 Pass True True True 1544565.97 7564.2 +ERR8665915 4656415.0 4634080.0 99.52 145 99.09 65.08 98.08 0.28 1.92 Pass True True True 4567086.51 13184.55