Mercurial > repos > iuc > qiime_plot_taxa_summary

changeset 7:3746401fe722 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 12:24:04 +0000
parents 809823acb296
children
files macros.xml plot_taxa_summary.xml
diffstat 2 files changed, 4 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Oct 30 19:40:38 2018 -0400
+++ b/macros.xml	Thu Dec 05 12:24:04 2019 +0000
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>
--- a/plot_taxa_summary.xml	Tue Oct 30 19:40:38 2018 -0400
+++ b/plot_taxa_summary.xml	Thu Dec 05 12:24:04 2019 +0000
@@ -1,4 +1,4 @@
-<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description> based on taxonomy assignment (plot_taxa_summary)</description>
     <macros>
         <import>macros.xml</import>
@@ -7,11 +7,7 @@
     <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
 #set $chosen_chart_type = str( $chart_type ).split( "," )
-
-## set matplotlib backend
-export MPLBACKEND="Agg" &&
-echo "backend:agg" > matplotlibrc &&
-
+@MPLBACKEND@
 plot_taxa_summary.py
     --counts_fname '$counts_fname'
     --dir_path taxa_plots