Mercurial > repos > iuc > qiime_pick_rep_set

comparison pick_rep_set.xml @ 5:3968e8aa988f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
author iuc
date Fri, 04 Aug 2017 18:26:16 -0400
parents 86ec85651763
children 5762ad96d376
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4:bc6a7b89fd43 5:3968e8aa988f
1 <tool id="qiime_pick_rep_set" name="Pick representative set of sequences" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_pick_rep_set" name="Pick representative set of sequences" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description> (pick_rep_set)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <version_command>pick_rep_set.py --version</version_command> 7 <version_command>pick_rep_set.py --version</version_command>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 pick_rep_set.py 9 pick_rep_set.py
10 --input_file '$input_file' 10 --input_file '$input_file'
11 #if $picking.type == "de_novo" 11 #if $picking.type == "de_novo"
12 --fasta_file '$picking.fasta_file' 12 --fasta_file '$picking.fasta_file'
13 #else if $picking.type == "preferred" 13 #else if $picking.type == "preferred"
14 --reference_seqs_fp '$picking.reference_seqs_fp' 14 --reference_seqs_fp '$picking.reference_seqs_fp'
15 #if $picking.fasta_file 15 #if $picking.fasta_file
16 --fasta_file '$picking.fasta_file' 16 --fasta_file '$picking.fasta_file'
17 #end if 17 #end if
18 #end if 18 #end if
19 --rep_set_picking_method '$rep_set_picking_method' 19 --rep_set_picking_method '$rep_set_picking_method'
20 --sort_by '$sort_by' 20 --sort_by '$sort_by'
21 --result_fp '$result_fp' 21 --result_fp '$result_fp'
22 --log_fp '$log_fp' 22 --log_fp '$log_fp'
23 ]]></command> 23 ]]></command>
24 <inputs> 24 <inputs>
25 <param argument="--input_file" type="data" format="txt" label="Input OTU mapping file"/> 25 <param argument="--input_file" type="data" format="txt" label="Input OTU mapping file"/>
26 <conditional name="picking"> 26 <conditional name="picking">
27 <param name="type" type="select" label="Type of OTU picking"> 27 <param name="type" type="select" label="Type of OTU picking">