Mercurial > repos > iuc > qiime_extract_barcodes

annotate test-data/split_libraries/split_library_log @ 2:88b6e9b6e0aa draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 12:31:03 +0000
parents 4cef836d3ae4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
1 Number raw input seqs 8
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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2
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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3 Length outside bounds of 200 and 1000 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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4 Num ambiguous bases exceeds limit of 6 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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5 Missing Qual Score 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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6 Mean qual score below minimum of 25 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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7 Max homopolymer run exceeds limit of 6 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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8 Num mismatches in primer exceeds limit of 0: 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
9
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
10 Sequence length details for all sequences passing quality filters:
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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11 Raw len min/max/avg 244.0/276.0/255.5
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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12 Wrote len min/max/avg 211.0/243.0/222.5
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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13
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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14 Barcodes corrected/not 0/0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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15 Uncorrected barcodes will not be written to the output fasta file.
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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16 Corrected barcodes will be written with the appropriate barcode category.
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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17 Corrected but unassigned sequences will not be written unless --retain_unassigned_reads is enabled.
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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18
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
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19 Total valid barcodes that are not in mapping file 0
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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20 Sequences associated with valid barcodes that are not in the mapping file will not be written.
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
21
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
22 Barcodes in mapping file
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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23 Num Samples 3
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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24 Sample ct min/max/mean: 2 / 4 / 2.67
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
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25 Sample Sequence Count Barcode
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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26 PC.634 4 ACAGAGTCGGCT
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
27 PC.354 2 AGCACGAGCCTA
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
28 PC.481 2 ACCAGCGACTAG
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
29 PC.593 0 AGCAGCACTTGT
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
30 PC.636 0 ACGGTGAGTGTC
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
31 PC.635 0 ACCGCAGAGTCA
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
32 PC.356 0 ACAGACCACTCA
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
33 PC.607 0 AACTGTGCGTAC
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
diff changeset
34 PC.355 0 AACTCGTCGATG
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
parents:
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35
4cef836d3ae4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
iuc
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36 Total number seqs written 8