Mercurial > repos > iuc > qiime_count_seqs

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 12:29:08 +0000
parents 6fa025b2685e
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6fbdeb8bf1db "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
iuc
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1 <tool id="qiime_count_seqs" name="Count the sequences" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
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6fa025b2685e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
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2 <description>in a fasta file (count_seqs)</description>
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3 <macros>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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4 <import>macros.xml</import>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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5 </macros>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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6 <expand macro="requirements"/>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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7 <version_command>count_seqs.py --version</version_command>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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8 <command detect_errors="aggressive"><![CDATA[
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6fbdeb8bf1db "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
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9 @MPLBACKEND@
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10 count_seqs.py
6fa025b2685e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
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11 --input_fps '$input_fps'
6fa025b2685e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
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12 -o '$output_fp'
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13 ]]></command>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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14 <inputs>
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6fa025b2685e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 88c494b035a34b097247a29bfd3515875d94ce2b
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15 <param argument="--input_fps" type="data" format="fasta" multiple="true" label="Input sequence file"/>
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16 </inputs>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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17 <outputs>
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18 <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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23 <output name="output_fp" ftype="txt">
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24 <assert_contents>
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25 <has_text text="Sequence lengths"/>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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26 <has_text text="Total"/>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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27 </assert_contents>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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28 </output>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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29 </test>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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30 </tests>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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31 <help><![CDATA[
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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32 **What it does**
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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33
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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34 This tool counts the sequences in fasta files
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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36 More information about this tool is available on
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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37 `QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
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38 ]]></help>
d6b87f4f7be9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
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39 <citations>
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40 <expand macro="citations"/>
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41 </citations>
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42 </tool>