[x-axis]
where = top

[spacer]
height = 0.05

[hic matrix]
file = Li_et_al_2015.h5
title = classical depth=300000 with arcs
depth = 300000
transform = log1p
file_type = hic_matrix

[test arcs overlay]
file = test_wide.arcs
color = red
line_width = 5
links_type = loops
overlay_previous = share-y

[hic matrix square]
file = Li_et_al_2015.h5
title = square with arcs
transform = log1p
file_type = hic_matrix_square

[test arcs overlay]
file = test_wide.arcs
color = red
line_width = 5
links_type = squares
overlay_previous = share-y

[hic matrix square]
file = Li_et_al_2015.h5
title = square with arcs region2=chrX:3000000-3100000
transform = log1p
file_type = hic_matrix_square
region2 = chrX:3000000-3100000

[test arcs overlay]
file = test_wide.arcs
color = red
line_width = 5
links_type = squares
overlay_previous = share-y

[hic matrix square]
file = Li_et_al_2015.h5
title = square with domains, colormap = Blues, tranform = no, region2=chrX:3000000-3100000
file_type = hic_matrix_square
region2 = chrX:3000000-3100000
colormap = Blues
transform = no

[test domains]
file = tad_classification.bed
color = none
border_color = black
display = squares
overlay_previous = share-y