Mercurial > repos > iuc > pygenometracks

diff test-data/test23.ini @ 11:2f09a07c94ab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author: iuc
date: Sat, 01 Oct 2022 08:42:18 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test23.ini	Sat Oct 01 08:42:18 2022 +0000
@@ -0,0 +1,61 @@
+[x-axis]
+where = top
+
+[spacer]
+height = 0.05
+
+[hic matrix]
+file = Li_et_al_2015.h5
+title = classical depth=300000 with arcs
+depth = 300000
+transform = log1p
+file_type = hic_matrix
+
+[test arcs overlay]
+file = test_wide.arcs
+color = red
+line_width = 5
+links_type = loops
+overlay_previous = share-y
+
+[hic matrix square]
+file = Li_et_al_2015.h5
+title = square with arcs
+transform = log1p
+file_type = hic_matrix_square
+
+[test arcs overlay]
+file = test_wide.arcs
+color = red
+line_width = 5
+links_type = squares
+overlay_previous = share-y
+
+[hic matrix square]
+file = Li_et_al_2015.h5
+title = square with arcs region2=chrX:3000000-3100000
+transform = log1p
+file_type = hic_matrix_square
+region2 = chrX:3000000-3100000
+
+[test arcs overlay]
+file = test_wide.arcs
+color = red
+line_width = 5
+links_type = squares
+overlay_previous = share-y
+
+[hic matrix square]
+file = Li_et_al_2015.h5
+title = square with domains, colormap = Blues, tranform = no, region2=chrX:3000000-3100000
+file_type = hic_matrix_square
+region2 = chrX:3000000-3100000
+colormap = Blues
+transform = no
+
+[test domains]
+file = tad_classification.bed
+color = none
+border_color = black
+display = squares
+overlay_previous = share-y