Mercurial > repos > iuc > pygenometracks

comparison pyGenomeTracks.xml @ 1:f4b8c2ccc5f7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit f834c2a294c002123ef0613dc703aca00201b5bf
author iuc
date Mon, 02 Jul 2018 19:31:55 -0400
parents 5141268dba30
children 6aafcf02bd9a
comparison
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0:5141268dba30 1:f4b8c2ccc5f7
1 <tool id="pygenomeTracks" name="@BINARY@" version="@WRAPPER_VERSION@.0"> 1 <tool id="pygenomeTracks" name="@BINARY@" version="@WRAPPER_VERSION@.1">
2 <description>plot genomic data tracks</description> 2 <description>plot genomic data tracks</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">pyGenomeTracks</token> 4 <token name="@BINARY@">pyGenomeTracks</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <configfiles> 21 <configfiles>
22 <configfile name="tracks_config"> 22 <configfile name="tracks_config">
23 #if $x_axis.x_axis_select == "yes": 23 #if $x_axis.x_axis_select == "yes":
24 #if $x_axis.where == 'top':
24 [x-axis] 25 [x-axis]
25 #if $x_axis.fontsize: 26 #if $x_axis.fontsize:
26 fontsize = $x_axis.fontsize 27 fontsize = $x_axis.fontsize
27 #end if 28 #end if
28 #if $x_axis.where: 29 #if $x_axis.where:
29 where = $x_axis.where 30 where = $x_axis.where
31 #end if
30 #end if 32 #end if
31 #end if 33 #end if
32 #for $counter, $track in enumerate($tracks): 34 #for $counter, $track in enumerate($tracks):
33 #if $track.track_file_style_conditional.track_file_style_selector == "hic_matrix_option": 35 #if $track.track_file_style_conditional.track_file_style_selector == "hic_matrix_option":
34 36
324 [spacer] 326 [spacer]
325 #if $track.track_file_style_conditional.spacer_height: 327 #if $track.track_file_style_conditional.spacer_height:
326 height = $track.track_file_style_conditional.spacer_height 328 height = $track.track_file_style_conditional.spacer_height
327 #end if 329 #end if
328 #end if 330 #end if
329 #end for</configfile> 331 #end for
332
333 #if $x_axis.x_axis_select == "yes":
334 #if $x_axis.where == 'bottom':
335 [x-axis]
336 #if $x_axis.fontsize:
337 fontsize = $x_axis.fontsize
338 #end if
339 #if $x_axis.where:
340 where = $x_axis.where
341 #end if
342 #end if
343 #end if
344 </configfile>
330 </configfiles> 345 </configfiles>
331 <inputs> 346 <inputs>
332 <expand macro="region" /> 347 <expand macro="region" />
333 348
334 <repeat name="tracks" min="1" title="Include tracks in your plot" 349 <repeat name="tracks" min="1" title="Include tracks in your plot"
492 <option value="yes">Yes</option> 507 <option value="yes">Yes</option>
493 </param> 508 </param>
494 <when value="yes"> 509 <when value="yes">
495 <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> 510 <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
496 <param name="where" type="select" optional="True" label="Where to place the x-axis"> 511 <param name="where" type="select" optional="True" label="Where to place the x-axis">
497 <option value="top">Top</option> 512 <option value="top" >Top</option>
498 <option value="bottom">Bottom</option> 513 <option value="bottom">Bottom</option>
499 </param> 514 </param>
500 </when> 515 </when>
501 <when value="no" /> 516 <when value="no" />
502 </conditional> 517 </conditional>