Mercurial > repos > iuc > pygenometracks

comparison pyGenomeTracks.xml @ 13:e0c00f68067f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit b7df28a308484a4af1d33e0ddc2c4e391643ec1e
author iuc
date Tue, 28 Mar 2023 10:48:08 +0000
parents ca69a2c9afc9
children d640aa8a24ab
comparison
equal deleted inserted replaced
12:ca69a2c9afc9 13:e0c00f68067f
424 #end if 424 #end if
425 show_data_range = $track.track_file_style_conditional.show_data 425 show_data_range = $track.track_file_style_conditional.show_data
426 grid = $track.track_file_style_conditional.grid 426 grid = $track.track_file_style_conditional.grid
427 nans_to_zeros = $track.track_file_style_conditional.nans_to_zeros 427 nans_to_zeros = $track.track_file_style_conditional.nans_to_zeros
428 use_middle = $track.track_file_style_conditional.use_middle 428 use_middle = $track.track_file_style_conditional.use_middle
429 #set $columns = len(open(str($track.track_file_style_conditional.track_input_bedgraph)).readline().split('\t')) 429 #if int(data_bedgraph.metadata.columns) > 4:
430 #if $columns > 4:
431 file_type = bedgraph_matrix 430 file_type = bedgraph_matrix
432 type = lines 431 type = lines
433 #else: 432 #else:
434 file_type = bedgraph 433 file_type = bedgraph
435 #if $track.track_file_style_conditional.type_conditional.type_selector == 'fill_option': 434 #if $track.track_file_style_conditional.type_conditional.type_selector == 'fill_option':
1511 <param name="xaxis_where" value="top" /> 1510 <param name="xaxis_where" value="top" />
1512 </conditional> 1511 </conditional>
1513 </repeat> 1512 </repeat>
1514 <repeat name="tracks"> 1513 <repeat name="tracks">
1515 <conditional name="track_file_style_conditional"> 1514 <conditional name="track_file_style_conditional">
1515 <param name="track_file_style_selector" value="bedgraph_track_option" />
1516 <param name="track_input_bedgraph" value="bedgraph_chrx_2e6_5e6.bg,bedgraph2_X_2.5e6_3.5e6.bdg,tad_score.gz" />
1517 <param name="title" value="rep bed" />
1518 <param name="show_data" value="true" />
1519 <conditional name="type_conditional">
1520 <param name="type_selector" value="point_option" />
1521 <param name="width_point" value="2" />
1522 </conditional>
1523 </conditional>
1524 </repeat>
1525 <repeat name="tracks">
1526 <conditional name="track_file_style_conditional">
1516 <param name="track_file_style_selector" value="bigwig_track_option" /> 1527 <param name="track_file_style_selector" value="bigwig_track_option" />
1517 <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw,bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> 1528 <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw,bigwig_chrx_2e6_5e6.bw" ftype="bigwig" />
1518 <param name="title" value="rep 1 test line" /> 1529 <param name="title" value="rep 1 test line" />
1519 <param name="height_bigwig" value="4" /> 1530 <param name="height_bigwig" value="4" />
1520 <param name="color" value="red" /> 1531 <param name="color" value="red" />