Mercurial > repos > iuc > pygenometracks

comparison test-data/test19.ini @ 11:2f09a07c94ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author iuc
date Sat, 01 Oct 2022 08:42:18 +0000
parents 345d24273a58
children c7af51147b55
comparison
equal deleted inserted replaced
10:5f9a41f84844 11:2f09a07c94ab
1 [test bedgraph] 1 [bedgraph_0]
2 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 2 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
3 title = bedgraph color = blue transform = no
3 color = blue 4 color = blue
4 height = 5 5 alpha = 1.0
5 title = bedgraph color = blue transform = no 6 height = 5.0
6 transform = no 7 show_data_range = true
7 grid = true 8 grid = true
8 9 nans_to_zeros = false
9 [test bedgraph] 10 use_middle = false
11 file_type = bedgraph
12 type = fill
13 overlay_previous = no
14 [bedgraph_1]
10 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 15 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
16 title = bedgraph color = blue transform = log
11 color = blue 17 color = blue
12 height = 5 18 alpha = 1.0
13 title = bedgraph color = blue transform = log 19 height = 5.0
20 show_data_range = true
21 grid = true
22 nans_to_zeros = false
23 use_middle = false
24 file_type = bedgraph
25 type = fill
14 transform = log 26 transform = log
27 y_axis_values = transformed
28 log_pseudocount = 0.0
29 overlay_previous = no
30 [bedgraph_2]
31 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
32 title = bedgraph color = red transform = log min_value = 1
33 color = red
34 alpha = 1.0
35 height = 5.0
36 min_value = 1.0
37 show_data_range = true
15 grid = true 38 grid = true
16 39 nans_to_zeros = false
17 [test bedgraph] 40 use_middle = false
41 file_type = bedgraph
42 type = fill
43 transform = log
44 y_axis_values = transformed
45 log_pseudocount = 0.0
46 overlay_previous = no
47 [bedgraph_3]
18 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 48 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
19 color = red 49 title = bedgraph color = green transform = log log_pseudocount = 2 min_value = 0
20 height = 5 50 color = green
21 title = bedgraph color = red transform = log min_value = 1 51 alpha = 1.0
22 min_value = 1 52 height = 5.0
53 min_value = 0.0
54 show_data_range = true
55 grid = true
56 nans_to_zeros = false
57 use_middle = false
58 file_type = bedgraph
59 type = fill
23 transform = log 60 transform = log
61 y_axis_values = transformed
62 log_pseudocount = 2.0
63 overlay_previous = no
64 [bedgraph_4]
65 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
66 title = bedgraph color = green operation = log(2+file) min_value = 0.7
67 color = green
68 alpha = 1.0
69 height = 5.0
70 min_value = 0.7
71 show_data_range = true
24 grid = true 72 grid = true
25 73 nans_to_zeros = false
26 [test bedgraph] 74 use_middle = false
75 file_type = bedgraph
76 type = fill
77 operation = log(2+file)
78 overlay_previous = no
79 [bedgraph_5]
27 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 80 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
28 color = green 81 title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0
29 height = 5 82 color = black
30 title = bedgraph color = green transform = log log_pseudocount = 2 min_value = 0 83 alpha = 1.0
31 transform = log 84 height = 5.0
32 log_pseudocount = 2 85 min_value = 0.0
33 min_value = 0 86 show_data_range = true
34 grid = true 87 grid = true
35 88 nans_to_zeros = false
36 [test bedgraph with operation] 89 use_middle = false
90 file_type = bedgraph
91 type = fill
92 transform = log2
93 y_axis_values = transformed
94 log_pseudocount = 1.0
95 overlay_previous = no
96 [bedgraph_6]
37 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 97 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
38 color = green 98 title = bedgraph color = black operation = log2(1+file) min_value = 0
39 height = 5 99 color = black
40 title = bedgraph color = green operation = log(2+file) min_value = 0.7 100 alpha = 1.0
41 operation = log(2+file) 101 height = 5.0
42 min_value = 0.7 102 min_value = 0.0
103 show_data_range = true
43 grid = true 104 grid = true
44 105 nans_to_zeros = false
45 [test bedgraph] 106 use_middle = false
107 file_type = bedgraph
108 type = fill
109 operation = log2(1+file)
110 overlay_previous = no
111 [bedgraph_7]
46 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz 112 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
113 title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0 y_axis_values = original
47 color = black 114 color = black
48 height = 5 115 alpha = 1.0
49 title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0 116 height = 5.0
117 min_value = 0.0
118 show_data_range = true
119 grid = true
120 nans_to_zeros = false
121 use_middle = false
122 file_type = bedgraph
123 type = fill
50 transform = log2 124 transform = log2
51 log_pseudocount = 1
52 min_value = 0
53 grid = true
54
55 [test bedgraph]
56 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
57 color = black
58 height = 5
59 title = bedgraph color = black operation = log2(1+file) min_value = 0
60 operation = log2(1+file)
61 min_value = 0
62 grid = true
63
64 [test bedgraph]
65 file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz
66 color = black
67 height = 5
68 title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0 y_axis_values = original
69 transform = log2
70 log_pseudocount = 1
71 min_value = 0
72 y_axis_values = original 125 y_axis_values = original
73 grid = true 126 log_pseudocount = 1.0
74 127 overlay_previous = no
75 [x-axis] 128 [x-axis]
129 where = bottom