Mercurial > repos > iuc > pygenometracks

comparison test-data/first.maf @ 11:2f09a07c94ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author iuc
date Sat, 01 Oct 2022 08:42:18 +0000
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comparison
equal deleted inserted replaced
10:5f9a41f84844 11:2f09a07c94ab
1 ##maf version=1
2 a score=41100.0
3 s mm10.chr2 34705072 4 + 182113224 G-AAG
4 s rn5.chr3 19096925 4 + 183740530 G-AAG
5 i rn5.chr3 C 0 C 0
6 s hg19.chr9 13114691 4 - 141213431 G-ACA
7 i hg19.chr9 I 195 I 6
8
9 a score=423183.0
10 s mm10.chr2 34705076 25 + 182113224 AGGTGGAGA-------ACTATAGAATTTGAAA
11 s rn5.chr3 19096929 25 + 183740530 AGGCAGAGA-------ACTGTGGAGTTTGAAA
12 i rn5.chr3 C 0 C 0
13 s hg19.chr9 13114701 25 - 141213431 AAATAAAAG-------GCTGTAAATCTTGAAG
14 i hg19.chr9 I 6 C 0
15
16 a score=66158.0
17 s mm10.chr2 34705101 4 + 182113224 GTCT
18 s rn5.chr3 19096954 4 + 183740530 GGCT
19 i rn5.chr3 C 0 C 0
20 s hg19.chr9 13114726 4 - 141213431 TTCT
21 i hg19.chr9 C 0 C 0
22
23 a score=387811.0
24 s mm10.chr2 34705105 18 + 182113224 AATATTGCTTTCA---GCAAA
25 s rn5.chr3 19096958 18 + 183740530 AATATTGCTTTCA---GCAAA
26 i rn5.chr3 C 0 C 0
27 s hg19.chr9 13114730 18 - 141213431 AACACTGCTCTCA---GCAAA
28 i hg19.chr9 C 0 C 0
29
30 a score=10920.0
31 s mm10.chr2 34705123 1 + 182113224 T
32 s rn5.chr3 19096976 1 + 183740530 T
33 i rn5.chr3 C 0 C 0
34 s hg19.chr9 13114748 1 - 141213431 T
35 i hg19.chr9 C 0 C 0
36
37 a score=-29032.0
38 s mm10.chr2 34705124 7 + 182113224 GTCTTGA---
39 s rn5.chr3 19096977 7 + 183740530 GTCCTAA---
40 i rn5.chr3 C 0 C 0
41 s hg19.chr9 13114749 2 - 141213431 -----AA---
42 i hg19.chr9 C 0 C 0
43
44 a score=-6898.0
45 s mm10.chr2 34705131 8 + 182113224 TTTA------AAAA
46 s rn5.chr3 19096984 8 + 183740530 TTTT------AAAA
47 i rn5.chr3 C 0 C 0
48 s hg19.chr9 13114751 8 - 141213431 CTTT------AAAA
49 i hg19.chr9 C 0 I 1
50
51 a score=37882.0
52 s mm10.chr2 34705139 24 + 182113224 AAAAATCTATGAGTGAAATG---AATA
53 s rn5.chr3 19096992 23 + 183740530 CGAATTC-ATGAATGAAATG---AATA
54 i rn5.chr3 C 0 C 0
55 s hg19.chr9 13114760 24 - 141213431 AGATAAGTATGCAGAGGATG---GAAA
56 i hg19.chr9 I 1 C 0
57
58 a score=2589.0
59 s mm10.chr2 34705163 1 + 182113224 T
60 s rn5.chr3 19097015 1 + 183740530 T
61 i rn5.chr3 C 0 C 0
62 s hg19.chr9 13114784 1 - 141213431 T
63 i hg19.chr9 C 0 C 0
64
65 a score=-36380.0
66 s mm10.chr2 34705164 35 + 182113224 ATAATGCCATGAAAT--TGACTCTA-ATTTCT-AAATGT
67 s rn5.chr3 19097016 30 + 183740530 ATAATGCCACG-AAT--TAACTCTA-ATTTCT-AA----
68 i rn5.chr3 C 0 C 0
69 s hg19.chr9 13114785 32 - 141213431 -TTCAAACATAAAA---AAATTATT-A-ATCT-AAATGT
70 i hg19.chr9 C 0 C 0
71
72 a score=33050.0
73 s mm10.chr2 34705199 17 + 182113224 ACTA-TTTTA--GACTACAG
74 s rn5.chr3 19097046 14 + 183740530 ---A-TCTTA--GACTACAG
75 i rn5.chr3 C 0 C 0
76 s hg19.chr9 13114817 13 - 141213431 -----TTTTA--GTCTGAAG
77 i hg19.chr9 C 0 I 3470
78
79 a score=548.0
80 s mm10.chr2 34705216 11 + 182113224 AACTCCCCCTC--
81 s rn5.chr3 19097060 11 + 183740530 AACCCCCACTC--
82 i rn5.chr3 C 0 C 0
83
84 a score=-4856.0
85 s mm10.chr2 34705227 6 + 182113224 CCCAAA-
86 s rn5.chr3 19097071 6 + 183740530 CCAAAA-
87 i rn5.chr3 C 0 C 0
88
89 a score=87104.0
90 s mm10.chr2 34705233 20 + 182113224 AGATAACCCTAACTAAGCAT
91 s rn5.chr3 19097077 16 + 183740530 AGATACCC----CTAAGCAC
92 i rn5.chr3 C 0 C 0
93
94 a score=1769.0
95 s mm10.chr2 34705253 1 + 182113224 G
96 s rn5.chr3 19097093 1 + 183740530 G
97 i rn5.chr3 C 0 C 0
98
99 a score=-7449.0
100 s mm10.chr2 34705254 3 + 182113224 TCT--
101 s rn5.chr3 19097094 3 + 183740530 TCT--
102 i rn5.chr3 C 0 C 0
103
104 a score=-9682.0
105 s mm10.chr2 34705257 3 + 182113224 TAA
106 s rn5.chr3 19097097 3 + 183740530 TAA
107 i rn5.chr3 C 0 C 0
108
109 a score=45039.0
110 s mm10.chr2 34705260 9 + 182113224 CACAACTAG
111 s rn5.chr3 19097100 9 + 183740530 CACAATTAG
112 i rn5.chr3 C 0 C 0
113
114 a score=4300.0
115 s mm10.chr2 34705269 1 + 182113224 A
116 s rn5.chr3 19097109 1 + 183740530 A
117 i rn5.chr3 C 0 C 0
118
119 a score=135112.0
120 s mm10.chr2 34705270 16 + 182113224 AA-T------ATTAAAATAG----GTA
121 s rn5.chr3 19097110 16 + 183740530 AA-T------ATTAAAATAG----GTA
122 i rn5.chr3 C 0 C 0
123
124 a score=171803.0
125 s mm10.chr2 34705286 14 + 182113224 AGTATACAGAGACT
126 s rn5.chr3 19097126 14 + 183740530 AGTATAAAGATACC
127 i rn5.chr3 C 0 C 0
128
129 a score=59500.0
130 s mm10.chr2 34705300 4 + 182113224 AAAA
131 s rn5.chr3 19097140 4 + 183740530 AAAA
132 i rn5.chr3 C 0 I 99
133 s hg19.chr9 13118300 4 - 141213431 ggac
134 i hg19.chr9 I 3470 C 0
135
136 a score=26234.0
137 s mm10.chr2 34705304 2 + 182113224 CT
138 s rn5.chr3 19097243 2 + 183740530 CT
139 i rn5.chr3 I 99 C 0
140 s hg19.chr9 13118304 2 - 141213431 tt
141 i hg19.chr9 C 0 C 0
142
143 a score=4664.0
144 s mm10.chr2 34705306 1 + 182113224 T
145 s rn5.chr3 19097245 1 + 183740530 T
146 i rn5.chr3 C 0 C 0
147
148 a score=10920.0
149 s mm10.chr2 34705307 1 + 182113224 T
150 s rn5.chr3 19097246 1 + 183740530 T
151 i rn5.chr3 C 0 C 0
152 s hg19.chr9 13118306 1 - 141213431 t
153 i hg19.chr9 C 0 C 0
154
155 a score=10500.0
156 s mm10.chr2 34705308 1 + 182113224 C
157 s rn5.chr3 19097247 1 + 183740530 C
158 i rn5.chr3 C 0 C 0
159 s hg19.chr9 13118307 1 - 141213431 c
160 i hg19.chr9 C 0 C 0
161
162 a score=1320.0
163 s mm10.chr2 34705309 14 + 182113224 TCCACTCACGGATT----
164 s rn5.chr3 19097248 14 + 183740530 TCCATTCATGGatt----
165 i rn5.chr3 C 0 C 0
166 s hg19.chr9 13118308 18 - 141213431 tctacacatggaattttt
167 i hg19.chr9 C 0 C 0
168
169 a score=8456.0
170 s mm10.chr2 34705323 15 + 182113224 TCCTTATAACAGATT
171 s rn5.chr3 19097262 15 + 183740530 tcattatgacagatt
172 i rn5.chr3 C 0 C 0
173 s hg19.chr9 13118326 15 - 141213431 tcattatgactgaca
174 i hg19.chr9 C 0 C 0
175
176 a score=352.0
177 s mm10.chr2 34705338 11 + 182113224 TCTAGAAGTAG---
178 s hg19.chr9 13118341 11 - 141213431 cctagaagtgg---
179 i hg19.chr9 C 0 C 0
180
181 a score=25195.0
182 s mm10.chr2 34705349 194 + 182113224 TTCT-------------------TTTTTTTCCCCGCCTtttttttgagacagggtttctctgtgtagatcttg-------gctgtcctggaactcact--ctgtagac-caggctggccttgaactcagaaatccgcctgcctctgcctctgcctctgcctcccaagtgctgggattaaaggcttgcagcaccactgcctggcCtttttt-------ttttttttaaaga
183
184 a score=0.0
185 s mm10.chr2 34705543 173 + 182113224 tttattattatttatatgtaagtacactgtagctatcctcagacacaccagtagagggcatcagatgtcatttcagatggttgtaaaccaccatgtggttgctaggatttgaactcaggaccttcattagaacagtcagtgctcttaaccgctgaaccatctctccagccccC
186
187 a score=1419.0
188 s mm10.chr2 34705716 5 + 182113224 TCTAG
189 s rn5.chr3 19097277 5 + 183740530 tctag
190 i rn5.chr3 C 0 C 0
191
192 a score=23757.0
193 s mm10.chr2 34705721 71 + 182113224 AAGTAGTTCTAACTGATCCAAATTTAGAATATGATCATCTAAGTCCCCAAGAACACATTGACAAGTTATGC
194 s rn5.chr3 19097282 71 + 183740530 aagtagttctaactgaaccaaatttagaatatgaacatttaagtccccacgtacacactgacaagttatgc
195 i rn5.chr3 C 0 I 271
196 s hg19.chr9 13118352 65 - 141213431 ------aactaacctgactaaatttagaatgtgaacatttaagaccttaaatagatactgacaaagtatgt
197 i hg19.chr9 C 0 C 0
198
199 a score=1587.0
200 s mm10.chr2 34705792 4 + 182113224 CCCA
201 s rn5.chr3 19097624 4 + 183740530 CCTG
202 i rn5.chr3 I 271 C 0
203 s hg19.chr9 13118417 4 - 141213431 ccca
204 i hg19.chr9 C 0 I 76
205
206 a score=1744.0
207 s mm10.chr2 34705796 49 + 182113224 CTTTGATTTTTAGGGCTTTGTTTT--GGTTGTTTTAGGATTTTTTTTTCTC
208 s rn5.chr3 19097628 51 + 183740530 CTTTGTTTTGTAGGAttttgcttttgggttttttcttctcttttttctttc
209 i rn5.chr3 C 0 C 0
210
211 a score=-3038.0
212 s mm10.chr2 34705845 83 + 182113224 CTTTTT----CTTTCGTttttggttttttggatcaggactcactatgtagact-tggctgacctagaactcactatgtagaccaggca
213 s rn5.chr3 19097679 83 + 183740530 tttttt----gttttttttttttttttttggataaaggctcactctacagact-tggctgacttggaactcactatgtaagccaggca
214 i rn5.chr3 C 0 C 0
215
216 a score=-8755.0
217 s mm10.chr2 34705928 42 + 182113224 agtctcaaactcatagatattccctg----gcctctatct---gagttc
218 s rn5.chr3 19097762 45 + 183740530 aatcttaaactcacagataatcccct----gcctccacctcctgagtgc
219 i rn5.chr3 C 0 C 0
220
221 a score=1299.0
222 s mm10.chr2 34705970 3 + 182113224 tga
223 s rn5.chr3 19097807 3 + 183740530 tga
224 i rn5.chr3 C 0 C 0
225
226 a score=-2713.0
227 s mm10.chr2 34705973 5 + 182113224 cattC
228 s rn5.chr3 19097810 5 + 183740530 tacaa
229 i rn5.chr3 C 0 C 0
230
231 a score=6695.0
232 s mm10.chr2 34705978 1 + 182113224 T
233 s rn5.chr3 19097815 1 + 183740530 t
234 i rn5.chr3 C 0 C 0
235
236 a score=395.0
237 s mm10.chr2 34705979 1 + 182113224 A
238 s rn5.chr3 19097816 1 + 183740530 a
239 i rn5.chr3 C 0 C 0
240
241 a score=28965.0
242 s mm10.chr2 34705980 8 + 182113224 TAATTACC
243 s rn5.chr3 19097817 8 + 183740530 tgaTTACC
244 i rn5.chr3 C 0 C 0
245
246 a score=12376.0
247 s mm10.chr2 34705988 1 + 182113224 T
248 s rn5.chr3 19097825 1 + 183740530 T
249 i rn5.chr3 C 0 C 0
250
251 a score=12907.0
252 s mm10.chr2 34705989 1 + 182113224 T
253 s rn5.chr3 19097826 1 + 183740530 T
254 i rn5.chr3 C 0 C 0
255
256 a score=258.0
257 s mm10.chr2 34705990 1 + 182113224 A
258 s rn5.chr3 19097827 1 + 183740530 A
259 i rn5.chr3 C 0 C 0
260
261 a score=29575.0
262 s mm10.chr2 34705991 1 + 182113224 A
263 s rn5.chr3 19097828 1 + 183740530 A
264 i rn5.chr3 C 0 C 0
265
266 a score=18893.0
267 s mm10.chr2 34705992 1 + 182113224 A
268 s rn5.chr3 19097829 1 + 183740530 A
269 i rn5.chr3 C 0 C 0
270
271 a score=395908.0
272 s mm10.chr2 34705993 19 + 182113224 A-------AGCCATTCT------CACTCCTAC
273 s rn5.chr3 19097830 19 + 183740530 A-------GGTCATTCT------CACCCCCAC
274 i rn5.chr3 C 0 C 0
275 s hg19.chr9 13118497 19 - 141213431 A-------AGTCATCCT------CATTTCCCC
276 i hg19.chr9 I 76 C 0
277 s sorAra1.scaffold_258498 5366 18 + 196505 A-------AGCCcctct------ttttcca-t
278 i sorAra1.scaffold_258498 N 0 C 0
279
280 a score=11678.0
281 s mm10.chr2 34706012 1 + 182113224 A
282 s rn5.chr3 19097849 1 + 183740530 A
283 i rn5.chr3 C 0 C 0
284 s hg19.chr9 13118516 1 - 141213431 C
285 i hg19.chr9 C 0 C 0
286 s sorAra1.scaffold_258498 5384 1 + 196505 t
287 i sorAra1.scaffold_258498 C 0 C 0
288
289 a score=41513.0
290 s mm10.chr2 34706013 1 + 182113224 A
291 s rn5.chr3 19097850 1 + 183740530 A
292 i rn5.chr3 C 0 C 0
293 s hg19.chr9 13118517 1 - 141213431 T
294 i hg19.chr9 C 0 C 0
295 s sorAra1.scaffold_258498 5385 1 + 196505 t
296 i sorAra1.scaffold_258498 C 0 C 0
297
298 a score=154000.0
299 s mm10.chr2 34706014 1 + 182113224 C
300 s rn5.chr3 19097851 1 + 183740530 C
301 i rn5.chr3 C 0 C 0
302 s hg19.chr9 13118518 1 - 141213431 C
303 i hg19.chr9 C 0 C 0
304 s sorAra1.scaffold_258498 5386 1 + 196505 c
305 i sorAra1.scaffold_258498 C 0 C 0
306
307 a score=98483.0
308 s mm10.chr2 34706015 1 + 182113224 T
309 s rn5.chr3 19097852 1 + 183740530 T
310 i rn5.chr3 C 0 C 0
311 s hg19.chr9 13118519 1 - 141213431 T
312 i hg19.chr9 C 0 C 0
313 s sorAra1.scaffold_258498 5387 1 + 196505 t
314 i sorAra1.scaffold_258498 C 0 C 0
315
316 a score=13020051.0
317 s mm10.chr2 34706016 111 + 182113224 T--ACCATGGGCTATGTCATCCATATCT--GGACTAGTTACA-GAATCTTTGCCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG
318 s rn5.chr3 19097853 111 + 183740530 T--ACCATGGGCTATGTCATCCACATCT--GGACTAGTTACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCGCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG
319 i rn5.chr3 C 0 C 0
320 s hg19.chr9 13118520 111 - 141213431 T--ACCGTGAGTTATTTCATCCATGTCT--GGACTAGTGACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCAATCTTATTGGGAATATCCTCAGAGG
321 i hg19.chr9 C 0 C 0
322 s sorAra1.scaffold_258498 5388 111 + 196505 t--accATGAGTTACTTCATCCATGTCT--GGGCTAGTGACA-GAGTCTTTACCCCC-AAAGTCA-GAGCTGCACTCAGA-TCTCAGGTCTTCTATCTTATTAGGAATATCCTCAGAGG
323 i sorAra1.scaffold_258498 C 0 C 0
324
325 a score=1769347.0
326 s mm10.chr2 34706127 14 + 182113224 TAGCACTTATACCT
327 s rn5.chr3 19097964 14 + 183740530 TAGCGCTTATGCCT
328 i rn5.chr3 C 0 C 0
329 s hg19.chr9 13118631 14 - 141213431 TTGCACTTATGCCT
330 i hg19.chr9 C 0 C 0
331 s sorAra1.scaffold_258498 5499 14 + 196505 TTGCACTTATgcct
332 i sorAra1.scaffold_258498 C 0 C 0
333
334 a score=-78567.0
335 s mm10.chr2 34706141 7 + 182113224 TTAAA-------------------AA-----
336 s rn5.chr3 19097978 7 + 183740530 TTGAA-------------------AA-----
337 i rn5.chr3 C 0 C 0
338 s hg19.chr9 13118645 7 - 141213431 TTAAA-------------------AA-----
339 i hg19.chr9 C 0 C 0
340 s sorAra1.scaffold_258498 5513 6 + 196505 tt-aa-------------------ag-----
341 i sorAra1.scaffold_258498 C 0 C 0
342
343 a score=-435240.0
344 s mm10.chr2 34706148 8 + 182113224 ATACAGCA--------------------------------------
345 s rn5.chr3 19097985 7 + 183740530 -TACAGCA--------------------------------------
346 i rn5.chr3 C 0 C 0
347 s hg19.chr9 13118652 1 - 141213431 -------A--------------------------------------
348 i hg19.chr9 C 0 C 0
349
350 a score=-126692.0
351 s mm10.chr2 34706156 2 + 182113224 A-A-
352 s rn5.chr3 19097992 2 + 183740530 A-A-
353 i rn5.chr3 C 0 C 0
354 s hg19.chr9 13118653 2 - 141213431 C-A-
355 i hg19.chr9 C 0 C 0
356 s sorAra1.scaffold_258498 5519 2 + 196505 a-t-
357 i sorAra1.scaffold_258498 C 0 C 0
358
359 a score=-311071.0
360 s mm10.chr2 34706158 6 + 182113224 A-A----TACA--
361 s rn5.chr3 19097994 5 + 183740530 A------TACA--
362 i rn5.chr3 C 0 C 0
363 s hg19.chr9 13118655 3 - 141213431 A--------TA--
364 i hg19.chr9 C 0 C 0
365 s sorAra1.scaffold_258498 5521 3 + 196505 a--------aa--
366 i sorAra1.scaffold_258498 C 0 C 0
367
368 a score=-651211.0
369 s mm10.chr2 34706164 10 + 182113224 TA--A--G----------------------------------------------------------------------------------------------TAAA--TA
370 s rn5.chr3 19097999 10 + 183740530 GA--A--G----------------------------------------------------------------------------------------------TAAA--TA
371 i rn5.chr3 C 0 C 0
372 s hg19.chr9 13118658 10 - 141213431 GT--A--A----------------------------------------------------------------------------------------------AAAA--TA
373 i hg19.chr9 C 0 C 0
374 s sorAra1.scaffold_258498 5524 12 + 196505 at--a--a--------------------------------------------------------------------------------------------ttaaaa--ct
375 i sorAra1.scaffold_258498 C 0 C 0
376
377 a score=165149.0
378 s mm10.chr2 34706174 5 + 182113224 AATAA
379 s rn5.chr3 19098009 4 + 183740530 AACA-
380 i rn5.chr3 C 0 C 0
381 s hg19.chr9 13118668 4 - 141213431 AACA-
382 i hg19.chr9 C 0 C 0
383 s sorAra1.scaffold_258498 5536 2 + 196505 a--a-
384 i sorAra1.scaffold_258498 C 0 C 0
385
386 a score=386714.0
387 s mm10.chr2 34706179 12 + 182113224 GCTGCAAG----AAGA--------
388 s rn5.chr3 19098013 9 + 183740530 ---GCAAG----AAGA--------
389 i rn5.chr3 C 0 C 0
390 s hg19.chr9 13118672 9 - 141213431 ---GGAAG----AAGA--------
391 i hg19.chr9 C 0 C 0
392 s sorAra1.scaffold_258498 5538 13 + 196505 ---gcAAACTGGAACA--------
393 i sorAra1.scaffold_258498 C 0 C 0
394
395 a score=224266.0
396 s mm10.chr2 34706191 6 + 182113224 CCAAAG--
397 s rn5.chr3 19098022 6 + 183740530 ACAAAG--
398 i rn5.chr3 C 0 C 0
399 s hg19.chr9 13118681 6 - 141213431 ACAAAA--
400 i hg19.chr9 C 0 C 0
401 s sorAra1.scaffold_258498 5551 6 + 196505 ACAAAA--
402 i sorAra1.scaffold_258498 C 0 C 0
403
404 a score=584015.0
405 s mm10.chr2 34706197 35 + 182113224 TAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTT--TATG---------AAG--TT-------------------------------T-GGAGAAA----------------------------------------------------TT--
406 s rn5.chr3 19098028 36 + 183740530 CAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTC--TACT---------AAG--TT-------------------------------TTGGATAAA----------------------------------------------------TC--
407 i rn5.chr3 C 0 C 0
408 s hg19.chr9 13118687 36 - 141213431 TATCCACAC-A-----AA---------------------------------------------------------------------------------A--AGTA--TATG---------AAA--TT-------------------------------T-GGAGAAA----------------------------------------------------CT--
409 i hg19.chr9 C 0 I 4
410 s sorAra1.scaffold_258498 5557 36 + 196505 TAAGCACAC-A-----GA---------------------------------------------------------------------------------A--AGTT--TATG---------AAG--TC-------------------------------T-GGAGAAA----------------------------------------------------GT--
411 i sorAra1.scaffold_258498 C 0 I 4
412
413 a score=-1110372.0
414 s mm10.chr2 34706232 43 + 182113224 CCTTTTC-------------------------------------------------AAA---CT--A---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAC------ATGTGA-GTTGCTGAGTGCT--------
415 s rn5.chr3 19098064 37 + 183740530 CCTCCTC-------------------------------------------------GAG---CT--G---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGA-GCTGCCGAGTGCT--------
416 i rn5.chr3 C 0 C 0
417 s hg19.chr9 13118727 47 - 141213431 CATTCTC-------------------------------------------------GAA---TT--T---TG--T----------------------------GTCCCAGT--TC------------------------------------------------------------------------------------------------------------------------TATAC------ATGTGA----GTTTAGTATT--------
418 i hg19.chr9 I 4 C 0
419 s sorAra1.scaffold_258498 5597 51 + 196505 TACCCTC-------------------------------------------------AATT--GT--T---TG--T----------------------------GTCCAGTTC-TA------------------------------------------------------------------------------------------------------------------------CACAC------AAGGGA-GCTG-CCGGTGTT--------
420 i sorAra1.scaffold_258498 I 4 C 0
421
422 a score=-57305.0
423 s mm10.chr2 34706275 9 + 182113224 G-------------------GCAAGTTA
424 s rn5.chr3 19098101 9 + 183740530 G-------------------CCACCTCA
425 i rn5.chr3 C 0 C 0
426
427 a score=-785463.0
428 s mm10.chr2 34706284 23 + 182113224 CCAC--------------------------------------------------------------------------TGTTA----TTCAAACACACT----TA-----------
429 s rn5.chr3 19098110 23 + 183740530 CCAC--------------------------------------------------------------------------TGCTG----TCCAAGTACACT----TA-----------
430 i rn5.chr3 C 0 C 0
431 s hg19.chr9 13118774 35 - 141213431 -------------------------------------------------------ATATCCTT---TA-T-GGTA--CTACTG----CTTAAATATACT----TA-----------
432 i hg19.chr9 C 0 C 0
433 s sorAra1.scaffold_258498 5648 36 + 196505 -------------------------------------------------------TCGGCTTT---TATC-AGTA--CTACTG----CTTAAATATGAT----TA-----------
434 i sorAra1.scaffold_258498 C 0 C 0
435
436 a score=38342.0
437 s mm10.chr2 34706307 6 + 182113224 TCTTGC-
438 s rn5.chr3 19098133 6 + 183740530 TCTTGC-
439 i rn5.chr3 C 0 C 0
440 s hg19.chr9 13118809 6 - 141213431 CCTTGC-
441 i hg19.chr9 C 0 C 0
442 s sorAra1.scaffold_258498 5684 5 + 196505 C-CCGA-
443 i sorAra1.scaffold_258498 C 0 C 0
444
445 a score=173064.0
446 s mm10.chr2 34706313 10 + 182113224 T-TTATACAAT
447 s rn5.chr3 19098139 8 + 183740530 T---ATACAGC
448 i rn5.chr3 C 0 C 0
449 s hg19.chr9 13118815 10 - 141213431 T-TTACACAAC
450 i hg19.chr9 C 0 C 0
451 s sorAra1.scaffold_258498 5689 7 + 196505 T-GTGTGC---
452 i sorAra1.scaffold_258498 C 0 C 0
453
454 a score=110922.0
455 s mm10.chr2 34706323 13 + 182113224 ATCATC------------------------------------------AGA---ATT-A
456 s rn5.chr3 19098147 13 + 183740530 AGCATC------------------------------------------AAA---AGT-T
457 i rn5.chr3 C 0 C 0
458 s hg19.chr9 13118825 13 - 141213431 ATAATC------------------------------------------AGA---ATC-G
459 i hg19.chr9 C 0 C 0
460 s sorAra1.scaffold_258498 5696 12 + 196505 -AAAAT------------------------------------------ATC---CAA-G
461 i sorAra1.scaffold_258498 C 0 I 1
462
463 a score=-155855.0
464 s mm10.chr2 34706336 16 + 182113224 CACGC----T----ATAC-----CTAAAT
465 s rn5.chr3 19098160 15 + 183740530 CATGC----T----GTAC-----CTAA-T
466 i rn5.chr3 C 0 C 0
467 s hg19.chr9 13118838 14 - 141213431 --TAC----A----ATTC-----TAAAGT
468 i hg19.chr9 C 0 C 0
469 s sorAra1.scaffold_258498 5709 16 + 196505 TACAT----G----CTCT-----GTACAC
470 i sorAra1.scaffold_258498 I 1 I 5
471
472 a score=5448.0
473 s mm10.chr2 34706352 3 + 182113224 ATC
474 s rn5.chr3 19098175 3 + 183740530 ATT
475 i rn5.chr3 C 0 C 0
476
477 a score=-7915.0
478 s mm10.chr2 34706355 2 + 182113224 GT-
479 s rn5.chr3 19098178 2 + 183740530 GT-
480 i rn5.chr3 C 0 C 0
481
482 a score=592160.0
483 s mm10.chr2 34706357 20 + 182113224 AGCAAAAGC-----TAT-CAAAAA----TA
484 s rn5.chr3 19098180 20 + 183740530 AGCAGAAGC-----TAC-CAAAAG----TA
485 i rn5.chr3 C 0 C 0
486 s hg19.chr9 13118852 20 - 141213431 AGGACAGGC-----TAC-TAAGAA----CA
487 i hg19.chr9 C 0 C 0
488 s sorAra1.scaffold_258498 5730 20 + 196505 AGCAGAAGC-----TAT-GCAGTA----CA
489 i sorAra1.scaffold_258498 I 5 C 0
490
491 a score=-246926.0
492 s mm10.chr2 34706377 6 + 182113224 TCA-----A--------GA
493 s rn5.chr3 19098200 6 + 183740530 TCG-----A--------AA
494 i rn5.chr3 C 0 C 0
495 s hg19.chr9 13118872 6 - 141213431 GAA-----A--------CA
496 i hg19.chr9 C 0 C 0
497 s sorAra1.scaffold_258498 5750 4 + 196505 GAT-----A----------
498 i sorAra1.scaffold_258498 C 0 C 0
499
500 a score=-935672.0
501 s mm10.chr2 34706383 18 + 182113224 GCTG------------------AA--------AG---AGGAG-----------------------CAGCA
502 s rn5.chr3 19098206 17 + 183740530 GCTG------------------AA---------G---AAGAA-----------------------CAGTT
503 i rn5.chr3 C 0 C 0
504 s hg19.chr9 13118878 17 - 141213431 GTTG------------------TA---------G---AGAGA-----------------------CTGTT
505 i hg19.chr9 C 0 C 0
506 s sorAra1.scaffold_258498 5754 20 + 196505 ----------------------GT---------C---AGGGAA---CA---CAC-----A-----TGAGC
507 i sorAra1.scaffold_258498 C 0 C 0
508
509 a score=499767.0
510 s mm10.chr2 34706401 25 + 182113224 CGTCCA--TTATTTT----AACAGGCTGTA--A
511 s rn5.chr3 19098223 23 + 183740530 CGTCAG--TTATC------AATAGGCTGTG--A
512 i rn5.chr3 C 0 C 0
513 s hg19.chr9 13118895 26 - 141213431 TGCCAA--TTACTTC----AACAGGCTCCAT-A
514 i hg19.chr9 C 0 C 0
515 s sorAra1.scaffold_258498 5774 26 + 196505 TGCAAA--TTACTTT----AATGAGCTCTGC-G
516 i sorAra1.scaffold_258498 C 0 C 0
517
518 a score=767553.0
519 s mm10.chr2 34706426 54 + 182113224 A----AGC------CACATATT--AAGTT----CTCAAAGA----TTAT------------G-AAG-GCATAAAATTAAT-TTTTTTCC
520 s rn5.chr3 19098246 54 + 183740530 A----AGC------TACACATT--AGGTT----CTCAAAGA----TTAT------------G-AAA-GCGTAAAATTGAT-TTTGTTCC
521 i rn5.chr3 C 0 C 0
522 s hg19.chr9 13118921 55 - 141213431 A----GGC------CACACATT--AAGTT----CTCAAAGAT---TTCA------------G-GTG-CAATGGAAATAAG-TTTGTTTT
523 i hg19.chr9 C 0 C 0
524 s sorAra1.scaffold_258498 5800 55 + 196505 A----AGC------CGCACATT--AAGCT----CTCATAGCT---ATTT------------G-GTA-CCCTAGAAATAAT-TTCATTCC
525 i sorAra1.scaffold_258498 C 0 C 0
526
527 a score=512662.0
528 s mm10.chr2 34706480 12 + 182113224 CTGG-GGACTACT
529 s rn5.chr3 19098300 12 + 183740530 CTGG-AGACTACT
530 i rn5.chr3 C 0 C 0
531 s hg19.chr9 13118976 12 - 141213431 CTGG-AAATTACT
532 i hg19.chr9 C 0 C 0
533 s sorAra1.scaffold_258498 5855 12 + 196505 CTGG-AAATCACC
534 i sorAra1.scaffold_258498 C 0 C 0
535
536 a score=266794.0
537 s mm10.chr2 34706492 19 + 182113224 GAG-AACTTAAATAA-CATA--T
538 s rn5.chr3 19098312 19 + 183740530 GAG-CTCTTAAATAA-CACA--T
539 i rn5.chr3 C 0 C 0
540 s hg19.chr9 13118988 19 - 141213431 CAG-CTCTTAAATAT-AACA--T
541 i hg19.chr9 C 0 I 2
542 s sorAra1.scaffold_258498 5867 1 + 196505 C----------------------
543 i sorAra1.scaffold_258498 C 0 C 0
544
545 a score=43661.0
546 s mm10.chr2 34706511 4 + 182113224 CT--CT
547 s rn5.chr3 19098331 4 + 183740530 CT--CT
548 i rn5.chr3 C 0 C 0
549 s hg19.chr9 13119009 4 - 141213431 CT--TT
550 i hg19.chr9 I 2 C 0
551
552 a score=10868.0
553 s mm10.chr2 34706515 1 + 182113224 T
554 s rn5.chr3 19098335 1 + 183740530 T
555 i rn5.chr3 C 0 C 0
556 s hg19.chr9 13119013 1 - 141213431 T
557 i hg19.chr9 C 0 C 0
558
559 a score=-67977.0
560 s mm10.chr2 34706516 23 + 182113224 gggggtggagatacagctcag----------------tg
561 s rn5.chr3 19098336 23 + 183740530 ggggacaaagctacagctcag----------------tg
562 i rn5.chr3 C 0 C 0
563
564 a score=-16667.0
565 s mm10.chr2 34706539 4 + 182113224 at---ga
566 s rn5.chr3 19098359 5 + 183740530 ac--aga
567 i rn5.chr3 C 0 C 0
568
569 a score=-47800.0
570 s mm10.chr2 34706543 9 + 182113224 acacatgac
571 s rn5.chr3 19098364 9 + 183740530 gcacatgac
572 i rn5.chr3 C 0 C 0
573 s sorAra1.scaffold_258498 5868 9 + 196505 GCTGGTAAT
574 i sorAra1.scaffold_258498 C 0 C 0
575
576 a score=-120172.0
577 s mm10.chr2 34706552 20 + 182113224 taacatgtcccaagtt--------------------ctgg
578 s rn5.chr3 19098373 20 + 183740530 taacatgtcccgagtt--------------------ctga
579 i rn5.chr3 C 0 C 0
580
581 a score=-60366.0
582 s mm10.chr2 34706572 21 + 182113224 gttcaacagatagtacca-------------------------------------------------------tac
583 s rn5.chr3 19098393 18 + 183740530 gttcaacagccagcacca----------------------------------------------------------
584 i rn5.chr3 C 0 C 0
585 s sorAra1.scaffold_258498 5877 5 + 196505 -------------TATCA----------------------------------------------------------
586 i sorAra1.scaffold_258498 C 0 C 0
587
588 a score=-3306.0
589 s mm10.chr2 34706593 3 + 182113224 cat--
590
591 a score=-199980.0
592 s mm10.chr2 34706596 23 + 182113224 aa------aacAGCCAACAAAACCC-AGTT--------------
593 s rn5.chr3 19098411 18 + 183740530 ----------gcagcaacaaaaCCC-AGT---------------
594 i rn5.chr3 C 0 C 0
595 s hg19.chr9 13119014 7 - 141213431 ------------------TGTATCA-------------------
596 i hg19.chr9 C 0 C 0
597
598 a score=21021.0
599 s mm10.chr2 34706619 1 + 182113224 A
600 s rn5.chr3 19098429 1 + 183740530 A
601 i rn5.chr3 C 0 C 0
602
603 a score=28151.0
604 s mm10.chr2 34706620 3 + 182113224 TCT
605 s rn5.chr3 19098430 3 + 183740530 TCT
606 i rn5.chr3 C 0 C 0
607
608 a score=21179.0
609 s mm10.chr2 34706623 3 + 182113224 CTT-
610 s rn5.chr3 19098433 3 + 183740530 CTT-
611 i rn5.chr3 C 0 C 0
612
613 a score=-542671.0
614 s mm10.chr2 34706626 14 + 182113224 TGG-TAAC-----AC------------T--------TTAT--------
615 s rn5.chr3 19098436 14 + 183740530 TGG-TAAC-----AC------------T--------TTAT--------
616 i rn5.chr3 C 0 C 0
617 s hg19.chr9 13119021 7 - 141213431 -------------AC------------T--------TTAT--------
618 i hg19.chr9 C 0 C 0
619 s sorAra1.scaffold_258498 5882 7 + 196505 -------------AC------------A--------TTAT--------
620 i sorAra1.scaffold_258498 C 0 C 0
621
622 a score=-12000.0
623 s mm10.chr2 34706640 5 + 182113224 AAAC-A
624 s rn5.chr3 19098450 5 + 183740530 AAAC-A
625 i rn5.chr3 C 0 C 0
626 s hg19.chr9 13119028 5 - 141213431 AAAT-A
627 i hg19.chr9 C 0 C 0
628 s sorAra1.scaffold_258498 5889 5 + 196505 ACAC-G
629 i sorAra1.scaffold_258498 C 0 C 0
630
631 a score=112347.0
632 s mm10.chr2 34706645 2 + 182113224 GA
633 s rn5.chr3 19098455 2 + 183740530 GA
634 i rn5.chr3 C 0 C 0
635 s hg19.chr9 13119033 2 - 141213431 GG
636 i hg19.chr9 C 0 I 7
637 s sorAra1.scaffold_258498 5894 2 + 196505 GG
638 i sorAra1.scaffold_258498 C 0 C 0
639
640 a score=-75428.0
641 s mm10.chr2 34706647 10 + 182113224 AAGA-AGGGGA
642 s rn5.chr3 19098457 10 + 183740530 AAGA-AGGGGA
643 i rn5.chr3 C 0 C 0
644 s hg19.chr9 13119042 10 - 141213431 AGGG-GGTGAA
645 i hg19.chr9 I 7 C 0
646 s sorAra1.scaffold_258498 5896 10 + 196505 GTGG-TAGGAA
647 i sorAra1.scaffold_258498 C 0 C 0
648
649 a score=26690.0
650 s mm10.chr2 34706657 1 + 182113224 T
651 s rn5.chr3 19098467 1 + 183740530 T
652 i rn5.chr3 C 0 C 0
653 s hg19.chr9 13119052 1 - 141213431 C
654 i hg19.chr9 C 0 C 0
655 s sorAra1.scaffold_258498 5906 1 + 196505 C
656 i sorAra1.scaffold_258498 C 0 I 2
657
658 a score=582929.0
659 s mm10.chr2 34706658 21 + 182113224 GCCTTCAAA--------------------TTCCTAGC----CCTT
660 s rn5.chr3 19098468 21 + 183740530 GCCTTCAAA--------------------TTCCTAGT----CCTT
661 i rn5.chr3 C 0 C 0
662 s hg19.chr9 13119053 21 - 141213431 ACCTTCAAA--------------------TCCCTACT----CCTT
663 i hg19.chr9 C 0 C 0
664 s sorAra1.scaffold_258498 5909 21 + 196505 ACCTTCCAA--------------------TCCTTATT----CCTT
665 i sorAra1.scaffold_258498 I 2 C 0
666
667 a score=357258.0
668 s mm10.chr2 34706679 6 + 182113224 AAAAC---------------------------------A---
669 s rn5.chr3 19098489 6 + 183740530 AAAAC---------------------------------A---
670 i rn5.chr3 C 0 C 0
671 s hg19.chr9 13119074 6 - 141213431 AAAAC---------------------------------A---
672 i hg19.chr9 C 0 C 0
673 s sorAra1.scaffold_258498 5930 6 + 196505 AAAAC---------------------------------A---
674 i sorAra1.scaffold_258498 C 0 C 0
675
676 a score=522064.0
677 s mm10.chr2 34706685 8 + 182113224 AGA-C-AGAC
678 s rn5.chr3 19098495 8 + 183740530 AGA-C-AGAC
679 i rn5.chr3 C 0 C 0
680 s hg19.chr9 13119080 8 - 141213431 AGA-C-AGAC
681 i hg19.chr9 C 0 C 0
682 s sorAra1.scaffold_258498 5936 8 + 196505 AGA-C-AGAC
683 i sorAra1.scaffold_258498 C 0 C 0
684
685 a score=75873.0
686 s mm10.chr2 34706693 1 + 182113224 A
687 s rn5.chr3 19098503 1 + 183740530 A
688 i rn5.chr3 C 0 C 0
689 s hg19.chr9 13119088 1 - 141213431 A
690 i hg19.chr9 C 0 C 0
691 s sorAra1.scaffold_258498 5944 1 + 196505 A
692 i sorAra1.scaffold_258498 C 0 C 0
693
694 a score=117040.0
695 s mm10.chr2 34706694 1 + 182113224 T
696 s rn5.chr3 19098504 1 + 183740530 T
697 i rn5.chr3 C 0 C 0
698 s hg19.chr9 13119089 1 - 141213431 T
699 i hg19.chr9 C 0 C 0
700 s sorAra1.scaffold_258498 5945 1 + 196505 T
701 i sorAra1.scaffold_258498 C 0 C 0
702
703 a score=18601995.0
704 s mm10.chr2 34706695 141 + 182113224 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGA
705 s rn5.chr3 19098505 141 + 183740530 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTACTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGC
706 i rn5.chr3 C 0 C 0
707 s hg19.chr9 13119090 141 - 141213431 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTA-CCCAGTCCAGAACAG---CTCT-CCAGTTCTTGCAGACGCTCCTCCTGCTTTAGGTCTGGGGCCTCTAA
708 i hg19.chr9 C 0 C 0
709 s sorAra1.scaffold_258498 5946 141 + 196505 A-CCCGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTGTCGTCA-GAGGTGCTG-CCCAGGCCGGAACAG---CTCT-CCAGCTCCTGCAGACGCTCCTCCTGCTTCAGGTCTGGGGCTTCTAG
710 i sorAra1.scaffold_258498 C 0 C 0
711
712 a score=93544.0
713 s mm10.chr2 34706836 1 + 182113224 A
714 s rn5.chr3 19098646 1 + 183740530 A
715 i rn5.chr3 C 0 C 0
716 s hg19.chr9 13119231 1 - 141213431 A
717 i hg19.chr9 C 0 C 0
718 s sorAra1.scaffold_258498 6087 1 + 196505 G
719 i sorAra1.scaffold_258498 C 0 C 0
720
721 a score=265691.0
722 s mm10.chr2 34706837 6 + 182113224 CAGAAA-
723 s rn5.chr3 19098647 6 + 183740530 CAGAGA-
724 i rn5.chr3 C 0 C 0
725 s hg19.chr9 13119232 6 - 141213431 TAGAAG-
726 i hg19.chr9 C 0 C 0
727 s sorAra1.scaffold_258498 6088 6 + 196505 GAAAGA-
728 i sorAra1.scaffold_258498 C 0 C 0
729
730 a score=100475.0
731 s mm10.chr2 34706843 1 + 182113224 A
732 s rn5.chr3 19098653 1 + 183740530 A
733 i rn5.chr3 C 0 I 41
734 s hg19.chr9 13119238 1 - 141213431 A
735 i hg19.chr9 C 0 I 45
736 s sorAra1.scaffold_258498 6094 1 + 196505 G
737 i sorAra1.scaffold_258498 C 0 I 41
738
739 a score=123198.0
740 s mm10.chr2 34706844 2 + 182113224 CA
741 s rn5.chr3 19098695 2 + 183740530 CA
742 i rn5.chr3 I 41 C 0
743 s hg19.chr9 13119284 2 - 141213431 CA
744 i hg19.chr9 I 45 C 0
745 s sorAra1.scaffold_258498 6136 2 + 196505 CC
746 i sorAra1.scaffold_258498 I 41 C 0
747
748 a score=83667.0
749 s mm10.chr2 34706846 1 + 182113224 G
750 s rn5.chr3 19098697 1 + 183740530 G
751 i rn5.chr3 C 0 C 0
752 s hg19.chr9 13119286 1 - 141213431 G
753 i hg19.chr9 C 0 C 0
754 s sorAra1.scaffold_258498 6138 1 + 196505 A
755 i sorAra1.scaffold_258498 C 0 C 0
756
757 a score=30972.0
758 s mm10.chr2 34706847 1 + 182113224 C
759 s rn5.chr3 19098698 1 + 183740530 C
760 i rn5.chr3 C 0 C 0
761 s hg19.chr9 13119287 1 - 141213431 C
762 i hg19.chr9 C 0 C 0
763 s sorAra1.scaffold_258498 6139 1 + 196505 C
764 i sorAra1.scaffold_258498 C 0 C 0
765
766 a score=74745.0
767 s mm10.chr2 34706848 1 + 182113224 T
768 s rn5.chr3 19098699 1 + 183740530 T
769 i rn5.chr3 C 0 C 0
770 s hg19.chr9 13119288 1 - 141213431 T
771 i hg19.chr9 C 0 C 0
772 s sorAra1.scaffold_258498 6140 1 + 196505 T
773 i sorAra1.scaffold_258498 C 0 C 0
774
775 a score=223036.0
776 s mm10.chr2 34706849 11 + 182113224 TT------TG-TG--ACT-TA
777 s rn5.chr3 19098700 11 + 183740530 TT------TG-TG--ACT-TA
778 i rn5.chr3 C 0 C 0
779 s hg19.chr9 13119289 11 - 141213431 TT------TG-TG--ACC-CA
780 i hg19.chr9 C 0 C 0
781 s sorAra1.scaffold_258498 6141 11 + 196505 TC------CG-TG--ACC-CA
782 i sorAra1.scaffold_258498 C 0 C 0
783
784 a score=3047381.0
785 s mm10.chr2 34706860 139 + 182113224 GACATACAAG---C-------G-ATT-GGGG----AATAAA-GAGAT---TT----------A-------TAAG------CCTAAGCTACTT-AGC-AAAG-CTAGTTAG---ATCA---TAGTTTAAAGAAGAT-A---AGGTTATGA--TTTC-CTCCTGATA-----TACACACT---AGTTTGT----------TATGTACAG-ATGTCAAC---T
786 s rn5.chr3 19098711 134 + 183740530 G----AGAAG---C-------C-ACT-GGGG----AATACC-TAGCT---TT----------A-------TAAG------TCTAAGTTACTC-ACC-AAAA-CTTGTTAG---ATCA---TAGATT-AAGAAGGC-A---AGGTTATAA--TTTC-CCCCTGATA-----TACACACT---AATTTGC----------TATGCACAG-ACGACAAC---T
787 i rn5.chr3 C 0 C 0
788 s hg19.chr9 13119300 149 - 141213431 G----ATAAA---CAAAG--CT-ACC-AGGG----CATGAA-TAAAA---TCAGTG-CAAATACATGTG-TAAG------TCTGGACTAGTT-----AATG-CTAGTTAG---ATTA---AGTGTT----AAGTC-A---AAGTTGTGAT-TTTC-ATCCCAATA-----TAAGC--C---AGTTCAC----------TGTGCACAG-ATGAAAAC-GTG
789 i hg19.chr9 C 0 C 0
790 s sorAra1.scaffold_258498 6152 151 + 196505 G----CTGAA---GAAAA--CTGAAC-AGGG----CTT--A-CGGAAGGGTCAGTG-TAAATAGATTTC-TAGG------TCTCGGCCAGTT-AGT-AAGG-CTGGTT-G---AAGA---AACGCCAAGGAAGTC-ATATCAACTCTGAT-TTTC--CCCCAGCA-----TAGGC--C---AGT----------------TGTACAG-ATAAAAAC-T--
791 i sorAra1.scaffold_258498 C 0 I 2
792
793 a score=-43731.0
794 s mm10.chr2 34706999 2 + 182113224 AT-
795 s rn5.chr3 19098845 2 + 183740530 GT-
796 i rn5.chr3 C 0 C 0
797 s hg19.chr9 13119449 1 - 141213431 G--
798 i hg19.chr9 C 0 C 0
799 s sorAra1.scaffold_258498 6305 2 + 196505 GG-
800 i sorAra1.scaffold_258498 I 2 C 0
801
802 a score=126153.0
803 s mm10.chr2 34707001 4 + 182113224 TTCT-
804 s rn5.chr3 19098847 4 + 183740530 TTCT-
805 i rn5.chr3 C 0 C 0
806 s hg19.chr9 13119450 4 - 141213431 TTCT-
807 i hg19.chr9 C 0 C 0
808 s sorAra1.scaffold_258498 6307 4 + 196505 TTTT-
809 i sorAra1.scaffold_258498 C 0 C 0
810
811 a score=311713.0
812 s mm10.chr2 34707005 8 + 182113224 AGAATACT
813 s rn5.chr3 19098851 8 + 183740530 AGACTACT
814 i rn5.chr3 C 0 C 0
815 s hg19.chr9 13119454 8 - 141213431 AGATCACT
816 i hg19.chr9 C 0 I 4
817 s sorAra1.scaffold_258498 6311 8 + 196505 AGATCACT
818 i sorAra1.scaffold_258498 C 0 C 0
819
820 a score=-2161.0
821 s mm10.chr2 34707013 2 + 182113224 TT
822 s rn5.chr3 19098859 2 + 183740530 CT
823 i rn5.chr3 C 0 I 199
824 s hg19.chr9 13119466 1 - 141213431 -T
825 i hg19.chr9 I 4 I 1
826
827 a score=-432190.0
828 s mm10.chr2 34707015 20 + 182113224 AAAGAAAAAAAAAAGCG------------AT----------T---------------
829 s rn5.chr3 19099060 26 + 183740530 aaacaaaacaaaacaaa------------acTGTA----CAT---------------
830 i rn5.chr3 I 199 C 0
831 s hg19.chr9 13119468 11 - 141213431 ---------------------------ACAGAGTA----TGC---------------
832 i hg19.chr9 I 1 C 0
833 s sorAra1.scaffold_258498 6319 17 + 196505 -------------------ATT--CTCAATGAGTG----TGC---------------
834 i sorAra1.scaffold_258498 C 0 C 0
835
836 a score=221858.0
837 s mm10.chr2 34707035 6 + 182113224 TCTTGG
838 s rn5.chr3 19099086 6 + 183740530 TCTTGG
839 i rn5.chr3 C 0 C 0
840 s hg19.chr9 13119479 6 - 141213431 TATTGA
841 i hg19.chr9 C 0 C 0
842 s sorAra1.scaffold_258498 6336 5 + 196505 TAC-GG
843 i sorAra1.scaffold_258498 C 0 C 0
844
845 a score=458493.0
846 s mm10.chr2 34707041 12 + 182113224 TTAACACGTAAA-
847 s rn5.chr3 19099092 12 + 183740530 TTAACACATAAA-
848 i rn5.chr3 C 0 C 0
849 s hg19.chr9 13119485 12 - 141213431 TTAACATGTGAA-
850 i hg19.chr9 C 0 C 0
851 s sorAra1.scaffold_258498 6341 12 + 196505 CTAACATGAAAA-
852 i sorAra1.scaffold_258498 C 0 C 0
853
854 a score=67988.0
855 s mm10.chr2 34707053 8 + 182113224 CTA---ATCAA
856 s rn5.chr3 19099104 5 + 183740530 CTG------AA
857 i rn5.chr3 C 0 C 0
858 s hg19.chr9 13119497 5 - 141213431 CTG------GA
859 i hg19.chr9 C 0 C 0
860 s sorAra1.scaffold_258498 6353 5 + 196505 CTG------AA
861 i sorAra1.scaffold_258498 C 0 C 0
862
863 a score=123485.0
864 s mm10.chr2 34707061 3 + 182113224 TAG
865 s rn5.chr3 19099109 3 + 183740530 CAG
866 i rn5.chr3 C 0 C 0
867 s hg19.chr9 13119502 3 - 141213431 CAA
868 i hg19.chr9 C 0 C 0
869 s sorAra1.scaffold_258498 6358 3 + 196505 CAA
870 i sorAra1.scaffold_258498 C 0 C 0
871
872 a score=33526.0
873 s mm10.chr2 34707064 4 + 182113224 GA--GC--
874 s rn5.chr3 19099112 4 + 183740530 GA--GC--
875 i rn5.chr3 C 0 C 0
876 s hg19.chr9 13119505 6 - 141213431 GAGAGT--
877 i hg19.chr9 C 0 C 0
878 s sorAra1.scaffold_258498 6361 6 + 196505 GAACGC--
879 i sorAra1.scaffold_258498 C 0 C 0
880
881 a score=167903.0
882 s mm10.chr2 34707068 8 + 182113224 A-CAGAAT--A
883 s rn5.chr3 19099116 8 + 183740530 A-CAGAAT--A
884 i rn5.chr3 C 0 C 0
885 s hg19.chr9 13119511 8 - 141213431 A-TGGAAT--A
886 i hg19.chr9 C 0 C 0
887 s sorAra1.scaffold_258498 6367 7 + 196505 A-GAGAAG---
888 i sorAra1.scaffold_258498 C 0 C 0
889
890 a score=2760.0
891 s mm10.chr2 34707076 1 + 182113224 A
892 s rn5.chr3 19099124 1 + 183740530 G
893 i rn5.chr3 C 0 C 0
894 s hg19.chr9 13119519 1 - 141213431 G
895 i hg19.chr9 C 0 C 0
896
897 a score=-203.0
898 s mm10.chr2 34707077 4 + 182113224 TATA---
899 s rn5.chr3 19099125 3 + 183740530 TGT----
900 i rn5.chr3 C 0 C 0
901 s hg19.chr9 13119520 3 - 141213431 CCT----
902 i hg19.chr9 C 0 C 0
903
904 a score=73448.0
905 s mm10.chr2 34707081 10 + 182113224 CAACACTGTA---
906 s rn5.chr3 19099128 9 + 183740530 -AACACTGTA---
907 i rn5.chr3 C 0 C 0
908 s hg19.chr9 13119523 9 - 141213431 -GGTATTAAA---
909 i hg19.chr9 C 0 C 0
910 s sorAra1.scaffold_258498 6374 1 + 196505 ---------A---
911 i sorAra1.scaffold_258498 C 0 C 0
912
913 a score=-28287.0
914 s mm10.chr2 34707091 5 + 182113224 TCAA---C
915 s rn5.chr3 19099137 7 + 183740530 TCCACT-C
916 i rn5.chr3 C 0 C 0
917 s sorAra1.scaffold_258498 6375 5 + 196505 TCAAC---
918 i sorAra1.scaffold_258498 C 0 C 0
919
920 a score=4831.0
921 s mm10.chr2 34707096 1 + 182113224 T
922 s rn5.chr3 19099144 1 + 183740530 T
923 i rn5.chr3 C 0 C 0
924 s hg19.chr9 13119532 1 - 141213431 T
925 i hg19.chr9 C 0 I 709
926 s sorAra1.scaffold_258498 6380 1 + 196505 T
927 i sorAra1.scaffold_258498 C 0 I 1
928
929 a score=555.0
930 s mm10.chr2 34707097 1 + 182113224 C
931 s rn5.chr3 19099145 1 + 183740530 C
932 i rn5.chr3 C 0 C 0
933
934 a score=18165.0
935 s mm10.chr2 34707098 3 + 182113224 TCT
936 s rn5.chr3 19099146 3 + 183740530 TCT
937 i rn5.chr3 C 0 C 0
938 s sorAra1.scaffold_258498 6382 2 + 196505 -TT
939 i sorAra1.scaffold_258498 I 1 C 0
940
941 a score=32760.0
942 s mm10.chr2 34707101 3 + 182113224 AAA
943 s rn5.chr3 19099149 3 + 183740530 AAA
944 i rn5.chr3 C 0 C 0
945 s sorAra1.scaffold_258498 6384 3 + 196505 AAA
946 i sorAra1.scaffold_258498 C 0 C 0
947
948 a score=-12377.0
949 s mm10.chr2 34707104 8 + 182113224 TCTCAATG
950 s rn5.chr3 19099152 8 + 183740530 GTTCAATG
951 i rn5.chr3 C 0 C 0
952 s sorAra1.scaffold_258498 6387 6 + 196505 --TTTAAA
953 i sorAra1.scaffold_258498 C 0 I 672
954
955 a score=13142.0
956 s mm10.chr2 34707112 17 + 182113224 ttctcaaaagcacttaa---
957 s rn5.chr3 19099160 17 + 183740530 TTTTCAAAAGCACTTAC---
958 i rn5.chr3 C 0 C 0
959
960 a score=2730.0
961 s mm10.chr2 34707129 2 + 182113224 aa
962 s rn5.chr3 19099177 2 + 183740530 AA
963 i rn5.chr3 C 0 C 0
964
965 a score=1746.0
966 s mm10.chr2 34707131 3 + 182113224 tgg
967 s rn5.chr3 19099179 3 + 183740530 Tgg
968 i rn5.chr3 C 0 C 0
969
970 a score=1998.0
971 s mm10.chr2 34707134 22 + 182113224 gcat------gaca--gcagggcaatctca
972 s rn5.chr3 19099182 24 + 183740530 gcat------gatattgcagggcactctca
973 i rn5.chr3 C 0 C 0
974
975 a score=452.0
976 s mm10.chr2 34707156 4 + 182113224 acac
977 s rn5.chr3 19099206 4 + 183740530 gcac
978 i rn5.chr3 C 0 C 0
979
980 a score=8445.0
981 s mm10.chr2 34707160 152 + 182113224 tcaataagcagaggcaggtggatctctgtgagtttgagtccagcctaaaatacactggcagttccatgaatagcctgagctacatgacgagatcctgtctcaaaCTAGCTCCAAAAAGGAAGACAGG-AAAATCATTTCTTTACTTAATACTT
982 s rn5.chr3 19099210 147 + 183740530 tcaagaggcagaggcaggtgga--tctgtaagtctgaggccagcctgaggttcactggcagttcca-gcatagcctgagctacatgatgagaccctggctcaaaccaa---aagaaaGAAAGAAAGGAAAAATGATTTCTTTATCTAATATTT
983 i rn5.chr3 C 0 I 1
984
985 a score=0.0
986 s mm10.chr2 34707312 6 + 182113224 TACCTA
987